Showing : enmix • reset
0
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21
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2.4k
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problem installing ENmix package
ENmix Bioconductor rtracklayer
written 3.1 years ago by • 0
0
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0
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647
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Help with ENmix readidat
ENmix IlluminaHumanMethylationEPICmanifest
updated 23 months ago by 3.8k • written 23 months ago by • 0
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0
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678
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can ENmix::oxBS.MLE be run on comBat-adjusted data?
ENmix comBat
3.1 years ago joannew • 0
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548
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ENmix: how to combine oxBS.MLE with RCP?
ENmix
3.1 years ago joannew • 0
0
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1
reply
829
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could not find function "ComBat.mc"
ENmix
updated 3.4 years ago by 3.8k • written 3.4 years ago by ▴ 10
1
vote
0
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587
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Error in peak calling with Combp
ENmix
3.5 years ago mwjnorris ▴ 10
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0
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637
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Error for ENmix::bmiq.mc() on one sample
ENmix
5.1 years ago moldach ▴ 20
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1.1k
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Error in ENmix::bmiq.mc(): BMIQ estimates encountered error, try to run it again
methylation ENmix BMIQ wateRmelon
5.2 years ago • updated 5.1 years ago moldach ▴ 20
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2
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964
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how to install ENmix github master branch on Ubuntu machine?
ENmix
written 7.7 years ago by ▴ 10
0
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4
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1.8k
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ComBat: Adjustment for 3experimental variables
ENmix combat.mc illumina450k combat sva
7.8 years ago DSP • 0
10 results • Page 1 of 1
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Comment: Input Question for deseq.r by ATpoint ★ 4.0k
It is unclear what "deseq.r" is. It is not part of DESeq2, and almost certainly no part of RSeqAn. Please add details, and keep in mind tha…
Answer: DESEQ2 output gives multiple groups when only 2 groups are present by ATpoint ★ 4.0k
In the first PCA plot there is almost certainly some hidden character like whitespaces in the column from colData that encodes this group. …
Answer: A ComBat-seq issue: the covariates are confounded by ATpoint ★ 4.0k
```r > table(batch, group) group batch egfr gfp her2 1 0 12 5 2 6 6 0 ``` All of her2 is batch2, all of egfr i…
Comment: DESeq2 setting significant p-value by Dev • 0
after running DESeq2 does it sort the value on the basis of pvalue, or anything, or does it give the data back in the input format I have …
Comment: DESeq filtering specific to contrasts by Carlin95 • 0
But wouldn't this result in a different gene set for each analysis stratification? How can you then compare if maybe gene x comes up in Tim…
Votes
Comment: Reading huge bismark coverage files using bbseq::read.bismark
Answer: Reading huge bismark coverage files using bbseq::read.bismark
Answer: Reading huge bismark coverage files using bbseq::read.bismark
Answer: How many of my genes from my gene list are in each KEGG pathway?
Comment: Light difference when using coef vs omit a group when compare 3 groups.
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