Bioconductor Ensdb

Showing : ensdb • reset

9

votes

14

replies

7.8k

views

Ensembl Rstudio ensembldb AnnotationHub ensdb

updated 5 months ago by shepherl 4.1k • written 2.9 years ago by jon.klonowski ▴ 40

4

votes

2

replies

2.0k

views

EnsDb ensembldb annotation AnnotationHub News

4.3 years ago Johannes Rainer ★ 2.1k

3

votes

0

replies

1.4k

views

annotation ensembldb EnsDb AnnotationHub News

5.1 years ago Johannes Rainer ★ 2.1k

3

votes

2

replies

2.1k

views

GRanges ChIPseeker annotatePeak TxDb EnsDb

updated 5.9 years ago by Johannes Rainer ★ 2.1k • written 5.9 years ago by foehn ▴ 100

4 results • Page 1 of 1

Recent ...

Replies

Answer: DESeq error: counts matrix should be numeric, currently it has mode: character by ATpoint ★ 4.6k

R thinks your data are characters (e.g. "1", "2", instead of 1, 2) so given that your `counts_data` indeed only contains counts, do: `mo…

Comment: Any tools to convert .gff to .gtf format by ControlF5 • 0

Yes, the Appsierra team recently built a tool to convert .gff to .gtf format. [ControlF5][1] is providing the best software testing service…

Comment: EuroBioC2024 abstract submission is open! by Alan Downey • 0

EuroBioC2024 has opened its abstract submission process, presenting an exciting opportunity for researchers to contribute to groundbreaking…

Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0

Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…

Answer: combining raw counts and estimated counts by O'Brien • 0

It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…

Votes

A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor

A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

Awards • All