Showing : ercc • reset
1
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1
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1.4k
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Incorporating RUVg results into ImpulseDE2 model
ImpulseDE2 ImpulseDE ERCC RUVSeq
4.3 years ago • updated 4.2 years ago Mallory ▴ 10
3
votes
2
replies
4.2k
views
Using the ERCC spike as a normalization factor for a custom algorithm
ERCC rna-seq edgeR tmm normalised values
updated 8.9 years ago by ★ 29k • written 8.9 years ago by • 0
27
votes
7
replies
17k
views
Usability of ERCC spike-ins in standard RNAseq experiments
RNAseq deseq2 ercc
updated 9.2 years ago by ★ 3.8k • written 9.2 years ago by ▴ 30
16
votes
5
replies
8.7k
views
DESeq and Limma+Voom Normalization for Rna-Seq Data Using Ercc Spike-In
limma voom deseq normalization ercc
updated 10.2 years ago by 53k • written 10.2 years ago by ▴ 120
8
votes
5
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6.2k
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edgeR and Normalization of RNAseq data using ERCC controls
edger ercc
11.1 years ago John ▴ 10
9
votes
4
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3.6k
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News: Experimental data package 'seqc'
seqc rsubread featurecounts subjunc ercc News
11.2 years ago Wei Shi ★ 3.6k
6 results • Page 1 of 1
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Comment: Quality control of shotgun metagenomics data by elonlilx54 • 0
If you are a fan of word guessing games like Wordle, then you definitely cannot ignore [Octordle][1] - a more challenging and attractive ex…
Answer: Incosistencies in buildSNNGraph() function by stephengriffin04 • 0
Thank you for shedding light on the inconsistencies in the `buildSNNGraph()` function. It's crucial for users to address these issues as th…
Answer: A problem occurs when running the monocle2 by stephengriffin04 • 0
I totally feel you on the monocle2 issues! I had a similar run-in with unexpected errors last week that had me pulling my hair out. Did you…
Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
limpa reads standard feature-level output from Spectronaut. You do not need to make any changes to the output before reading it into limpa.…
Comment: Question about the filterByExpr function inputs in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth Noted, thank you very much.
Votes
Comment: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Answer: Clarification on counting in Rsubread (featureCounts)
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