Bioconductor Ercc

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1.0k

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ImpulseDE2 ImpulseDE ERCC RUVSeq

3.3 years ago • updated 3.2 years ago Mallory ▴ 10

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3.4k

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ERCC rna-seq edgeR tmm normalised values

updated 7.9 years ago by Aaron Lun ★ 28k • written 7.9 years ago by what_theheck24 • 0

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16k

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RNAseq deseq2 ercc

updated 8.2 years ago by Simon Anders ★ 3.8k • written 8.2 years ago by mbeckste ▴ 30

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8.0k

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limma voom deseq normalization ercc

updated 9.2 years ago by Gordon Smyth 52k • written 9.2 years ago by komal.rathi ▴ 120

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5.7k

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edger ercc

10.1 years ago John ▴ 10

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3.1k

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seqc rsubread featurecounts subjunc ercc News

10.2 years ago Wei Shi ★ 3.6k

6 results • Page 1 of 1

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Answer: promoters_txdb <- promoters(txdb, upstream = 2000) is not 2000 by James W. MacDonald 67k

If you use `promoters` and do not provide an argument for something that has a default, you will get the default argument. Your last call t…

Comment: org.Hs.eg.db issue by k.panov • 0

installed R on another PC, works perfectly. ergo, problem outside of R probably..... :-(

Comment: MBDseq analysis using qsea package by Lukas ▴ 20

Hi, I checked in with Matthias and here is his response: You need to indicate "samples": "The indices of the samples for which individu…

Comment: DESeq2 analysis with transcript counts by sindhuri • 0

Thank you for the response. Currently I am using the R studio for analysis and Im running DESeq2 for analysis of the **transcript counts.ts…

Comment: iam not able to do retrive data using GEOquery R package by James W. MacDonald 67k

Another alternative is to use the `GEOmetadb` package ([vignette here)][1], which will allow you to make queries to identify GEO datasets t…

Votes

Answer: Issue carrying out DiffBind Analysis at a predefined peak set

Answer: Differential variability modelling with vst() expression

Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

Answer: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

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