Bioconductor Ercc

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1.3k

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ImpulseDE2 ImpulseDE ERCC RUVSeq

4.2 years ago • updated 4.1 years ago Mallory ▴ 10

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4.1k

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ERCC rna-seq edgeR tmm normalised values

updated 8.8 years ago by Aaron Lun ★ 29k • written 8.8 years ago by what_theheck24 • 0

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17k

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RNAseq deseq2 ercc

updated 9.2 years ago by Simon Anders ★ 3.8k • written 9.2 years ago by mbeckste ▴ 30

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8.6k

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limma voom deseq normalization ercc

updated 10.1 years ago by Gordon Smyth 53k • written 10.1 years ago by komal.rathi ▴ 120

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6.2k

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edger ercc

11.1 years ago John ▴ 10

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3.5k

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seqc rsubread featurecounts subjunc ercc News

11.1 years ago Wei Shi ★ 3.6k

6 results • Page 1 of 1

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Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by jtsy6383 • 0

Thanks for the reply Gordon. I am also working on the project and have been tasked to reformulate and add some details. We're interested i…

Answer: How does contrasts.fit do in limma to extract comparisons with a model having in by Gordon Smyth 53k

The limma Users Guide explains how to test for interactions or to test for contrasts very easily. limma can work with any design matrix, bu…

Answer: NUPOP usage by shepherl 4.2k

You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…

Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0

In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …

Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Votes

C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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Popular Question to Istvan Albert ▴ 50

Popular Question to Dario Strbenac ★ 1.6k

Scholar to Nikos Ignatiadis ▴ 180