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News: Bioconductor Course, Kenya 2025: Applications Open!
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18 days ago Maria Doyle ▴ 100
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News: Win 1 of 50 free virtual registrations to BioC Asia 2022 (Dec 1-2, 2022)
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written 2.3 years ago by ▴ 750
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News: European Bioconductor Conference 2023 planning
Europe Conference EuroBioC Events News
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News: News: BioCAsia2023 Abstract Submission & Registration Now Open!
Events BioCAsia Conference
17 months ago Maria Doyle ▴ 100
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News: Bioconductor call for events!
Bioconductor events community
24 months ago Maria Doyle ▴ 100
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News: Registrations are now open for BioC Asia 2022
Asia BioCAsia Conferences Events News
2.4 years ago • updated 2.3 years ago Peter Hickey ▴ 750
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News: Public Calendar of Events
Bioconductor events News
4.7 years ago shepherl 4.1k
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News: EMBO | EMBL Symposium: The Molecular Basis and Evolution of Sexual Dimorphism
events biology sexual dimorphism conference News
5.1 years ago EMBL Events • 0
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News: Registrations are now open for BioC Asia 2019
BioC Asia Events Conferences Bioinfosummer News
5.4 years ago Steve Pederson ▴ 170
9 results • Page 1 of 1
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Answer: SingleR with multiple single cell references by Aaron Lun ★ 28k
> Is it necessary to piece together the individual steps manually (e.g. aggregateReference, trainSingleR, classifySingleR, combineRecompute…
Answer: Automatically install dependencies by ATpoint ★ 4.7k
The BiocManager, which is sort of an extended wrapper around `install.packages`, installs all R dependencies. If you see errors then this i…
Answer: To count or not to count multi-overlapping reads? by Gordon Smyth 52k
> How does it handle reads that map to a gene that is located in a region that also has another gene but on the alternate strand? Overlapp…
Comment: Weird p-values using DESeq2? by ATpoint ★ 4.7k
This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `normTransform()…
Answer: Weird p-values using DESeq2? by Wolfgang Huber ★ 13k
Dear Ingrid, thank you for asking. Can you provide the input count matrix (you can "pseudonymize" the biological conditions and the gene n…
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A: Fraction count for multi mapping reads; how to generate input file for Deseq2 fo
Comment: Weird p-values using DESeq2?
Comment: Overcoming confounding in batch effect correction
Answer: Store Matrix in DataFrame Cell
Answer: enrichGOgradient color change
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Popular Question to Wolfgang Huber ★ 13k
Teacher to James W. MacDonald 68k
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