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News: Bioconductor Course, Kenya 2025: Applications Open!
Events Community Training Africa Bioconductor
10 months ago Maria Doyle ▴ 110
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News: Win 1 of 50 free virtual registrations to BioC Asia 2022 (Dec 1-2, 2022)
Asia BioCAsia Conferences Events BioC
written 3.1 years ago by ▴ 760
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News: European Bioconductor Conference 2023 planning
Europe Conference EuroBioC Events News
written 3.1 years ago by ▴ 110
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News: News: BioCAsia2023 Abstract Submission & Registration Now Open!
Events BioCAsia Conference
2.3 years ago Maria Doyle ▴ 110
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News: Bioconductor call for events!
Bioconductor events community
2.8 years ago Maria Doyle ▴ 110
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News: Registrations are now open for BioC Asia 2022
Asia BioCAsia Conferences Events News
3.2 years ago • updated 3.1 years ago Peter Hickey ▴ 760
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News: Public Calendar of Events
Bioconductor events News
5.6 years ago shepherl 4.2k
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News: EMBO | EMBL Symposium: The Molecular Basis and Evolution of Sexual Dimorphism
events biology sexual dimorphism conference News
5.9 years ago EMBL Events • 0
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News: Registrations are now open for BioC Asia 2019
BioC Asia Events Conferences Bioinfosummer News
6.2 years ago Steve Pederson ▴ 170
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Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Answer: PTM analysis in LIMPA by Gordon Smyth 53k
For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…
Answer: problem reading bam files into nucleR by James W. MacDonald 68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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Popular Question to Gordon Smyth 53k
Commentator to sina.nassiri ▴ 130
Popular Question to Hervé Pagès 16k
Popular Question to jared.andrews07 ▴ 30
Popular Question to James W. MacDonald 68k
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