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News: BioCAsia2023 Abstract Submission & Registration Now Open!
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8 months ago
Maria Doyle
▴ 70
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News:
Bioconductor call for events!
Bioconductor
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14 months ago
Maria Doyle
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Win 1 of 50 free virtual registrations to BioC Asia 2022 (Dec 1-2, 2022)
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written 18 months ago by
Peter Hickey
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News:
European Bioconductor Conference 2023 planning
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updated 10 days ago by
lauryfriese932
• 0 • written 18 months ago by
Maria Doyle
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Registrations are now open for BioC Asia 2022
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19 months ago • updated 18 months ago
Peter Hickey
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News:
Public Calendar of Events
Bioconductor
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4.0 years ago • updated 3.9 years ago
shepherl
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News:
EMBO | EMBL Symposium: The Molecular Basis and Evolution of Sexual Dimorphism
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4.3 years ago
EMBL Events
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Registrations are now open for BioC Asia 2019
BioC Asia
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Bioinfosummer
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4.6 years ago
Steve Pederson
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Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…
Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
• 0
Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…
Answer: More regions in union when increasing DBA$config$mergeOverlap
by
Rory Stark
★ 5.2k
I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
HAK
• 0
Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…
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A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
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