Showing : exon • reset
0
votes
2
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1.8k
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quasR - how are exon identifiers for exon counts determined
rnaseq exon quasr
updated 9.4 years ago by ★ 13k • written 9.4 years ago by • 0
0
votes
3
replies
2.8k
views
read count summed over exons is greater tham the gene-level read count using featureCounts
rsubread featurecounts exon mRNAseq
updated 6.9 years ago by ★ 3.6k • written 6.9 years ago by ▴ 10
1
vote
3
replies
1.4k
views
How can I use Annotatr on CDS?
Annotatr CDS Exon UTR
updated 6.2 years ago by ▴ 140 • written 6.2 years ago by • 0
1
vote
3
replies
1.3k
views
DEXSeq with large(ish) number of samples
DEXSeq exon memory dispersions estimateDispersions
4.0 years ago andreismolnikov00 • 0
1
vote
1
reply
639
views
Increased number of exons in DEXSeq
DEXSeq exon
updated 2.1 years ago by ★ 1.9k • written 2.1 years ago by • 0
0
votes
1
reply
827
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DEXSeq Exon count not working, please help with an alternative like featureCounts
splicing Exon featureCounts subread DEXSeq
23 months ago NIK • 0
0
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0
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381
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Getting the exon co-ordinates and location
exon AnnotationHubData
11 months ago mahima.g • 0
1
vote
5
replies
831
views
DEXSeq output included non-exist exons
DEXSeq exon_definition exon
updated 9 months ago by ★ 1.9k • written 10 months ago by • 0
8 results • Page 1 of 1
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Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks by ATpoint ★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Votes
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
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