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factor
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3
votes
11
replies
3.5k
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DESeq function taking too long
deseq2
deseq
factor
rnaseq
updated 6.8 years ago by
Peter Langfelder
★ 3.0k • written 6.8 years ago by
sup230
▴ 30
5
votes
4
replies
797
views
DESeq2 with multiple variable give me different results
Factor
Levels
Dispersionestimates
DESeq2
2.5 years ago
rafaelsolersanblas
▴ 50
2
votes
3
replies
1.6k
views
GenomicRanges_RaggedExperiment Error in as background, class mcol no method or default for coercing logical to factor
genomicranges
RaggedExperiment
coercion
logical
factor
updated 6.5 years ago by
Marcel Ramos
690 • written 6.5 years ago by
Taran
• 0
2
votes
2
replies
1.4k
views
How to extract factor levels of coldata from deseq object?
deseq2
levels
factor
colData
updated 5.2 years ago by
Michael Love
42k • written 5.2 years ago by
ariel
▴ 20
0
votes
2
replies
1.8k
views
GenomicRanges: `seqnames<-` can not work as expected
genomicranges
seqnames
factor
7.6 years ago
wcstcyx
▴ 30
0
votes
1
reply
673
views
DESeq2: Difference between two groups of conditions
factor
DESeq2
MultipleComparison
updated 2.5 years ago by
swbarnes2
★ 1.4k • written 2.5 years ago by
diegocastano182
• 0
0
votes
0
replies
820
views
Package in R to determine which factor values are overrepresented within a particular factor of interest
R
overrrepresentation
factor
variable
factor enrichment
7.6 years ago
IOM
▴ 20
7 results • Page
1 of 1
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Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ziliang
• 0
I am so confused and frustrated learning to use this software. Isn't how you merge the peaksets one of the most important steps for the com…
Answer: SingleR Label.Ont
by
Denis
• 0
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Comment: deseq2 results
by
sajadahmad41454
• 0
thank you so much and sorry for bothering you again and again, it is urgent because it is my project deadline. i have removed that sample a…
Comment: deseq2 results
by
swbarnes2
★ 1.4k
Ask the people who made the libraires if there was anything unusual in the QC of the outlier sample. Try to figure out what biologically …
Comment: Can't post a question containing code?
by
NATASHA
• 0
did you find a solution? I´m having the same problem
Votes
A: AIC-like measure for DESeq2
Comment: Extremely small p-values using Limma for proteomic data
Comment: Log-cpm values from limma
Comment: Log-cpm values from limma
Comment: deseq2 results
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