Bioconductor FlowDensity

Showing : flowDensity • reset

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flowDensity

7 months ago fredrikwallberg • 0

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flowDensity flowCore

10 months ago info ▴ 10

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775

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flowCore flowDensity

2.7 years ago nmchavez • 0

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flowdensity flowcore for loop

updated 5.9 years ago by Bioconductor Community 0 • written 6.0 years ago by beshea.jj • 0

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flowcore flow cytometry flowdensity hyperlog transformation

updated 6.2 years ago by Jiang, Mike ★ 1.3k • written 6.2 years ago by Joseph.Hanson • 0

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987

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flowDensity developers

updated 7.4 years ago by Martin Morgan 25k • written 7.4 years ago by mmalek • 0

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flowdensity flowviz

updated 8.7 years ago by Jiang, Mike ★ 1.3k • written 8.7 years ago by Ulrik Stervbo ▴ 30

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flowdensity

10.1 years ago rschmidt2 • 0

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flowClust openCyto flowDensity flowClust openCyto flowDensity

10.3 years ago Jiang, Mike ★ 1.3k

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flowClean flowDensity flowClean flowDensity

updated 10.4 years ago by Justin Meskas ▴ 60 • written 10.4 years ago by Kipper Fletez-Brant ▴ 150

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flowDensity flowDensity

updated 10.6 years ago by Josef Spidlen ▴ 140 • written 10.6 years ago by Raghu ▴ 20

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openCyto flowDensity openCyto flowDensity

10.6 years ago Jiang, Mike ★ 1.3k

12 results • Page 1 of 1

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Comment: ANOVA like approach of edgeR by Yunshun Chen ▴ 870

If you do it this way, the dispersion estimates would be much higher than they should (as the cell type difference is not accounted for in …

Comment: ANOVA like approach of edgeR by SamGG ▴ 350

Simply remove the cell type from the model. design <- model.matrix(~targets$Status)

Answer: ANOVA like approach of edgeR by Yunshun Chen ▴ 870

You could try the followings: > design <- model.matrix(~ 0 + group) > contrast <- makeContrasts(PvsL = 0.5*(L.pregnant + B.pregnan…

Answer: Identical samples after deseq2 batch effect removal by maripane • 0

Thanks Michael, so is there a way to work around this issue? Can I somehow make sure I can remove this batch effects without overcorrecti…

Comment: CleanUpRNAseq with a GTF that is missing mitochondria annotation data by rcreed • 0

The updated version worked well on my data. Thank you!

Votes

A: ANOVA-like test with edgeR

Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data

A: TopGO: How to retrieve the gene list related to a GO ID ?

A: Error in DESeqDataSet : some values in assay are not integers

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Scholar to Haibo Liu ▴ 20