Bioconductor Formula

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BatchEffect batch RNASeqR formula DESeq2

updated 20 months ago by Michael Love 41k • written 20 months ago by estafana.t98 • 0

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754

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deseq2 design formula

updated 3.5 years ago by Michael Love 41k • written 3.5 years ago by Bine ▴ 40

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2.4k

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deseq2 design formula batch effect

updated 4.2 years ago by swbarnes2 ★ 1.3k • written 4.2 years ago by l.rijnberk • 0

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2.0k

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deseq2 formula controls design

updated 4.7 years ago by Michael Love 41k • written 4.7 years ago by taveluz • 0

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1.3k

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variance formula expression

updated 5.3 years ago by mikhael.manurung ▴ 270 • written 5.3 years ago by rina ▴ 30

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1.3k

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DESeq2 design formula matrix

updated 5.9 years ago by Michael Love 41k • written 5.9 years ago by t.kuilman ▴ 170

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2.0k

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limma dose-response linear model model formula

updated 6.4 years ago by James W. MacDonald 65k • written 6.4 years ago by biominer ▴ 10

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1.6k

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limma design RNA-seq formula twins

updated 6.5 years ago by Aaron Lun ★ 28k • written 6.5 years ago by Simone • 0

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1.8k

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DESeq2 twins design formula RNA-seq

6.5 years ago Simone • 0

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2.3k

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dexseq linear model formula

updated 8.5 years ago by Alejandro Reyes ★ 1.9k • written 8.5 years ago by Cornwell, Adam ▴ 110

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25k

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rnaseq deseq2 formula Limma

9.0 years ago AurelieMLB ▴ 50

11 results • Page 1 of 1

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Answer: Method to find pathways different between 2 groups by Gordon Smyth 50k

> When I search camera limma on pubmed, I found 2 papers I am unclear what point you are trying to make. limma's camera method has been fo…

Comment: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

limma most certainly is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of …

Comment: package goseq seems to be not available on the latest version of R by Patrycja ▴ 20

limma package also isn't available.Is there any information when these packages will be available?

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…

Comment: DNAString: Standard checksum function? by Henrik Bengtsson ★ 2.4k

For completeness: SEGUID v2 (https://www.seguid.org/), implemented in CRAN package **[seguid](https://cran.r-project.org/package=seguid)*…

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Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Handling multiple differential expression comparisons

Answer: fgsea significant result

package goseq seems to be not available on the latest version of R

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Scholar to ATpoint ★ 4.1k