Showing : formula • reset
8
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10
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Design formula and Design matrix in DESeq
rnaseq deseq2 formula Limma
9.0 years ago AurelieMLB ▴ 50
0
votes
8
replies
2.0k
views
Two controls in RNAseq formula for DESeq2
deseq2 formula controls design
updated 4.7 years ago by 42k • written 4.7 years ago by • 0
3
votes
7
replies
1.8k
views
DESeq2 design formula: how to account for twin data (MZ and DZ)?
DESeq2 twins design formula RNA-seq
6.5 years ago Simone • 0
0
votes
5
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1.6k
views
Limma: how to account for twin data (both MZ and DZ twins)?
limma design RNA-seq formula twins
updated 6.5 years ago by ★ 28k • written 6.5 years ago by • 0
3
votes
8
replies
2.0k
views
Differential drug dosage effect between two genotypes in limma
limma dose-response linear model model formula
updated 6.4 years ago by 65k • written 6.4 years ago by ▴ 10
0
votes
5
replies
1.3k
views
DESeq2 design formula - correlation with ordered variable
DESeq2 design formula matrix
updated 5.9 years ago by 42k • written 5.9 years ago by ▴ 170
0
votes
6
replies
1.3k
views
variancePartition - testing for individuals
variance formula expression
updated 5.3 years ago by ▴ 270 • written 5.3 years ago by ▴ 30
0
votes
10
replies
2.4k
views
DEseq2 design formula correcting for batch
deseq2 design formula batch effect
updated 4.3 years ago by ★ 1.3k • written 4.3 years ago by • 0
0
votes
1
reply
756
views
DeSeq2 4 different formulas but 4 times the same heatmap...
deseq2 design formula
updated 3.6 years ago by 42k • written 3.6 years ago by ▴ 40
0
votes
1
reply
977
views
Batch effects in DESeq2: determination and model building
BatchEffect batch RNASeqR formula DESeq2
updated 20 months ago by 42k • written 20 months ago by • 0
5
votes
6
replies
2.3k
views
Translating model formula from DESeq to DEXSeq
dexseq linear model formula
updated 8.5 years ago by ★ 1.9k • written 8.5 years ago by ▴ 110
11 results • Page 1 of 1
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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0
That ll be helpful. Thank you.
Comment: Log-cpm values from limma by Shaimaa Gamal • 0
I have performed RUVg correction and extracted W, factors of unwanted variation. According to limma guide, > In the limma approach to RNA…
Comment: DSS CpG coverage threshold by j.gilbert • 0
Might be a bit late for the original poster :') but in case anyone else is wondering, the DSS user guide says: *Q: Do I need to filter out…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k
Segmentation is of the whole genome, I'll write some code for doing this later today.
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k
I'll take a look later. For next time, I've edited your post by enclosing the code in triple backticks (on their own link). This properly …
Votes
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
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