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8
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10
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25k
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Design formula and Design matrix in DESeq
rnaseq
deseq2
formula
Limma
9.0 years ago
AurelieMLB
▴ 50
0
votes
10
replies
2.4k
views
DEseq2 design formula correcting for batch
deseq2
design
formula
batch effect
updated 4.3 years ago by
swbarnes2
★ 1.3k • written 4.3 years ago by
l.rijnberk
• 0
0
votes
8
replies
2.0k
views
Two controls in RNAseq formula for DESeq2
deseq2
formula
controls
design
updated 4.7 years ago by
Michael Love
42k • written 4.7 years ago by
taveluz
• 0
3
votes
8
replies
2.0k
views
Differential drug dosage effect between two genotypes in limma
limma
dose-response
linear model
model
formula
updated 6.4 years ago by
James W. MacDonald
65k • written 6.4 years ago by
biominer
▴ 10
3
votes
7
replies
1.8k
views
DESeq2 design formula: how to account for twin data (MZ and DZ)?
DESeq2
twins
design
formula
RNA-seq
6.5 years ago
Simone
• 0
5
votes
6
replies
2.3k
views
Translating model formula from DESeq to DEXSeq
dexseq
linear model
formula
updated 8.5 years ago by
Alejandro Reyes
★ 1.9k • written 8.5 years ago by
Cornwell, Adam
▴ 110
0
votes
6
replies
1.3k
views
variancePartition - testing for individuals
variance
formula
expression
updated 5.3 years ago by
mikhael.manurung
▴ 270 • written 5.3 years ago by
rina
▴ 30
0
votes
5
replies
1.3k
views
DESeq2 design formula - correlation with ordered variable
DESeq2
design
formula
matrix
updated 5.9 years ago by
Michael Love
42k • written 5.9 years ago by
t.kuilman
▴ 170
0
votes
5
replies
1.6k
views
Limma: how to account for twin data (both MZ and DZ twins)?
limma
design
RNA-seq
formula
twins
updated 6.5 years ago by
Aaron Lun
★ 28k • written 6.5 years ago by
Simone
• 0
0
votes
1
reply
755
views
DeSeq2 4 different formulas but 4 times the same heatmap...
deseq2
design
formula
updated 3.5 years ago by
Michael Love
42k • written 3.5 years ago by
Bine
▴ 40
0
votes
1
reply
976
views
Batch effects in DESeq2: determination and model building
BatchEffect
batch
RNASeqR
formula
DESeq2
updated 20 months ago by
Michael Love
42k • written 20 months ago by
estafana.t98
• 0
11 results • Page
1 of 1
Recent ...
Replies
Comment: EGSEA usage with microarray data (with vooma)?
by
Chris
• 0
Hi Pekka, I also try EGSEA with microarray data. However, I got this error. Would you please have a suggestion? gsa = egsea.ma(numeric…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
> Any suggestions for methylation data segmentation? I think the same segmentation can be used.
Comment: deseq2 results
by
swbarnes2
★ 1.3k
Cross-posted https://www.biostars.org/p/9594331/#9594458
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
Mike Smith
★ 6.5k
The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…
Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ian D.
▴ 70
Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.
Votes
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
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to
Michael Love
42k
Popular Question
to
Haibo Liu
• 0
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to
HS
▴ 10
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to
DevelopingHippo
• 0
Scholar
to
Robert Castelo
★ 3.3k
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