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gaia cnv

updated 11 months ago by juanmafernandezm86 • 0 • written 4.0 years ago by rina ▴ 20

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gaia load_cnv

3.4 years ago Talip Zengin ▴ 10

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gaia genomicranges iranges

updated 4.0 years ago by Sandro Morganella ▴ 40 • written 4.0 years ago by Talip Zengin ▴ 10

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tcgabiolinks tcga cnv mac os x gaia

updated 4.0 years ago by rreck ▴ 20 • written 4.0 years ago by rina ▴ 20

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memory problem gaia

updated 4.7 years ago by Sandro Morganella ▴ 40 • written 4.7 years ago by drusmanbashir • 0

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gaia gaia

10.7 years ago viritha kaza ▴ 580

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Comment: pathview says my nonmodel species is unknown: "species invalid" by James W. MacDonald 60k

Ah, I get it. So what happens if you provide a species code (which can be an actual species code or the genus and species or even a common …

Comment: pathview says my nonmodel species is unknown: "species invalid" by nute11a • 0

Hi James, thanks so much for your response! I actually did: ``` test <- pathview(gene.data=geneList, pathway.id="00440", species="ppyr") ``…

Comment: DESeq2 on normalized data by ATpoint ★ 1.4k

It’s not supported. Use limma-trend with the log2-transformed normalized counts if that is all you have. See limma manual.

Comment: pathview says my nonmodel species is unknown: "species invalid" by James W. MacDonald 60k

My answer was a bit of a word salad, so perhaps this will illustrate better what I meant. ``` ## create a character object > MyKEGGSpecies…

Answer: pathview says my nonmodel species is unknown: "species invalid" by James W. MacDonald 60k

If you have a character object called 'MySpeciesCode' that is just your species code, then you have to pass that object to the function, **…

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A: conceptual question about FDR, FDR adjusted p-value and q-value

A: How to select summit size for histone ChiP-Seq in Diffbind

Answer: Unable to download supplementary files from GSE146963 using GEOquery

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