Showing : gcRMA • reset
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Farms library
gcrma PROcess farms gcrma PROcess farms
19.4 years ago Phguardiol@aol.com ▴ 720
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votes
2
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1.5k
views
median of the NUSE value
cdf affy gcrma affyPLM affyio cdf affy gcrma affyPLM affyio
updated 19.4 years ago by ★ 1.2k • written 19.4 years ago by ▴ 270
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2
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1.6k
views
Failure to install specific packages from Bioconductor on a Linux machine running R 2.3.1
affy gcrma matchprobes affyPLM affyio affy gcrma matchprobes affyPLM affyio
updated 19.4 years ago by ▴ 50 • written 19.4 years ago by ▴ 20
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2
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1.1k
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unnormalised vs normalised distribution
gcrma gcrma
updated 19.4 years ago by ★ 2.2k • written 19.4 years ago by ▴ 830
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8
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2.5k
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error message in gcrma
cdf affy gcrma matchprobes plier cdf affy gcrma matchprobes plier
updated 19.4 years ago by ★ 7.4k • written 19.4 years ago by ▴ 520
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0
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887
views
justGCRMA error in BioC 1.8
Microarray cdf affy gcrma matchprobes Microarray cdf affy gcrma matchprobes
19.4 years ago James W. MacDonald 68k
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0
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1.2k
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Why mm's changing after bg.adjust.gcrma?
drosgenome1 cdf Biobase reposTools affy gcrma affyPLM simpleaffy affyQCReport affyio cdf
19.5 years ago Jenny Drnevich ★ 2.2k
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4
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2.3k
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Failure to load Biobase
Biobase affy limma gcrma matchprobes affyio Biobase affy limma gcrma matchprobes affyio
updated 19.5 years ago by 25k • written 19.5 years ago by ★ 2.2k
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0
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1.0k
views
simpleAffy, custom chip error
GO cdf probe gcrma simpleaffy affyQCReport GO cdf probe gcrma simpleaffy affyQCReport
19.5 years ago Wittner, Ben ▴ 290
0
votes
0
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607
views
Bugfix in gcrma
Microarray Cancer gcrma Microarray Cancer gcrma
19.5 years ago James W. MacDonald 68k
0
votes
0
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845
views
justGCRMA error in BioC 1.8
cdf affy gcrma matchprobes cdf affy gcrma matchprobes
19.5 years ago echang4@life.uiuc.edu ▴ 110
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votes
4
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1.3k
views
a just.gcrma question
gcrma gcrma
updated 19.5 years ago by ▴ 200 • written 19.5 years ago by ▴ 890
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5
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1.7k
views
GCRMA Fold Change
probe gcrma PROcess probe gcrma PROcess
updated 19.5 years ago by ★ 2.2k • written 19.5 years ago by ▴ 20
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3
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1.8k
views
error in mas5calls() for soybean chip
Survival hu6800 cdf probe Biobase genefilter reposTools affy affydata limma gcrma made4
updated 19.6 years ago by ▴ 70 • written 19.6 years ago by ★ 2.2k
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0
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940
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A questions related to affymetrix chip normalizationfrom multiple platform
hgu133a hgu133b gcrma hgu133a hgu133b gcrma
19.6 years ago Li, Aiguo NIH/NCI ▴ 110
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votes
2
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1.5k
views
AnnBuilder problem for mu11ksuba
Organism mu11ksuba annotate limma gcrma matchprobes annaffy AnnBuilder Organism mu11ksuba
updated 19.6 years ago by ▴ 780 • written 19.6 years ago by ★ 1.4k
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0
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857
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Scaling Factor for Affymetrix chips
affy gcrma simpleaffy affy gcrma simpleaffy
19.7 years ago Jacky Pallas ▴ 10
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1
reply
940
views
Scaling Factor for Affymetrix chips.
affy gcrma affy gcrma
updated 19.7 years ago by ▴ 230 • written 19.7 years ago by ▴ 490
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0
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804
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Fwd: Re: Scaling Factor for Affymetrix chips.
GO probe affy gcrma GO probe affy gcrma
19.7 years ago Naomi Altman ★ 6.0k
0
votes
8
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2.0k
views
Trouble building Bioconductor
gcrma gcrma
19.7 years ago Atro Tossavainen ▴ 160
0
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1
reply
1.1k
views
degraded RNA and background correction
Normalization GO gcrma Normalization GO gcrma
19.7 years ago Jenny Drnevich ★ 2.2k
0
votes
5
replies
1.7k
views
Problems annotating a gene list
Annotation gcrma Annotation gcrma
updated 19.7 years ago by 21k • written 19.7 years ago by ▴ 110
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2
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1.5k
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Filter on Fold Change
genefilter affy gcrma genefilter affy gcrma
updated 19.7 years ago by ★ 1.0k • written 19.7 years ago by ▴ 110
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6
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2.0k
views
RNA degradation tends & options for analysis
affy limma gcrma affycoretools affy limma gcrma affycoretools
updated 19.7 years ago by 68k • written 19.7 years ago by ▴ 20
0
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2
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994
views
GCRMA and background
probe affy gcrma probe affy gcrma
updated 19.8 years ago by 68k • written 19.8 years ago by ▴ 460
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3
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1.3k
views
GCRMA explained in words
Cancer probe gcrma Cancer probe gcrma
updated 19.8 years ago by ▴ 200 • written 19.8 years ago by ★ 2.0k
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3
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1.3k
views
mouse 430_2 error message
gcrma gcrma
updated 19.8 years ago by ▴ 780 • written 19.8 years ago by ▴ 90
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3
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1.4k
views
ad hoc tools for affy tiling arrays?
Normalization Preprocessing gcrma Normalization Preprocessing gcrma
updated 19.8 years ago by ▴ 310 • written 19.8 years ago by ★ 6.5k
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0
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811
views
linear model vs. seperate normalization
limma gcrma limma gcrma
19.8 years ago Jianping Jin ▴ 890
0
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1
reply
818
views
ad hoc tools for affy tiling arrays?
Normalization gcrma Normalization gcrma
updated 19.8 years ago by ▴ 420 • written 19.8 years ago by ▴ 310
0
votes
1
reply
1.4k
views
GCRMA
Microarray Preprocessing gcrma BRAIN Microarray Preprocessing gcrma BRAIN
updated 19.8 years ago by ★ 2.0k • written 19.8 years ago by ▴ 20
0
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3
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941
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comparing method
gcrma gcrma
updated 19.8 years ago by ★ 6.0k • written 19.8 years ago by ▴ 30
0
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0
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1.4k
views
double violation of normalization assumptions?
Microarray Normalization probe limma gcrma Microarray Normalization probe limma gcrma
19.8 years ago Matthew Hannah ▴ 940
0
votes
1
reply
1.6k
views
double violation of normalization assumptions?
Normalization probe limma gcrma Normalization probe limma gcrma
updated 19.8 years ago by ★ 6.0k • written 19.8 years ago by ★ 2.2k
0
votes
1
reply
845
views
Memory issue on Linux running Affymetrix HG-U133_Plus_2
gcrma gcrma
updated 19.8 years ago by 68k • written 19.8 years ago by ▴ 90
0
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4
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1.6k
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affy & problems with not enough avaliable memory
affy gcrma affy gcrma
updated 19.8 years ago by ▴ 830 • written 19.8 years ago by ▴ 110
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15
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2.9k
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affy & problems with memory
affy gcrma affy gcrma
updated 19.8 years ago by ▴ 210 • written 19.8 years ago by ▴ 110
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votes
1
reply
816
views
How to cite GCRMA and SAM for paper?
gcrma gcrma
updated 19.8 years ago by ▴ 200 • written 19.8 years ago by ★ 1.1k
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0
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1.1k
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RMA or GCRMA
gcrma gcrma
19.8 years ago Nate King ▴ 30
0
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1
reply
1.1k
views
GOstats/tkWidgets/gcrma conflict
tkWidgets gcrma matchprobes GOstats tkWidgets gcrma matchprobes GOstats
updated 20.0 years ago by 25k • written 20.0 years ago by ▴ 80
0
votes
2
replies
895
views
GCRMA with custom chips
probe gcrma probe gcrma
updated 20.0 years ago by 68k • written 20.0 years ago by ▴ 50
0
votes
1
reply
661
views
gcrma and custom chips
GO probe gcrma GO probe gcrma
updated 20.0 years ago by 68k • written 20.0 years ago by ▴ 50
0
votes
0
replies
844
views
E. coli problems: bimodality and gcrma
probe gcrma probe gcrma
20.0 years ago Jenny Drnevich ★ 2.2k
0
votes
1
reply
685
views
bg.adjust.gcrma
cdf affy gcrma cdf affy gcrma
updated 20.1 years ago by 68k • written 20.1 years ago by ▴ 10
0
votes
0
replies
667
views
System configaration -Bioconductor for the best possible results (in terms of files processed)
gcrma convert gcrma convert
20.1 years ago Chaitanya Kommidi ▴ 30
0
votes
2
replies
1.5k
views
Matchprobe package
cdf probe gcrma cdf probe gcrma
updated 20.2 years ago by ▴ 120 • written 20.2 years ago by ★ 13k
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votes
2
replies
1.9k
views
gcRMA and normalization
Normalization gcrma Normalization gcrma
updated 20.2 years ago by ▴ 200 • written 20.2 years ago by ▴ 210
0
votes
1
reply
949
views
Problems with justGCRMA: Error in bg.adjust.fullmodel
vsn gcrma matchprobes plier vsn gcrma matchprobes plier
updated 20.2 years ago by 68k • written 20.2 years ago by ▴ 350
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1
reply
2.5k
views
Removing batch effects
vsn gcrma vsn gcrma
updated 20.2 years ago by ▴ 210 • written 20.2 years ago by ▴ 310
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2
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1.1k
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GCRMA, identical normalized values from 3 replicates
affy gcrma affy gcrma
updated 20.3 years ago by ▴ 200 • written 20.3 years ago by ▴ 810
406 results • Page 5 of 9
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Comment: Save the Date: BioC2026 by eja.gsssssswwse.r.m • 0
Que notícia incrivel sobre o BioC2026 Para quem gosta de aproveitar o conteudo online, também e possvel Baixar [snaptube versão antiga][1] …
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Keeping up with Ensembls latest release ensures access to cutting-edge genomic information. For those balancing research and leisure, a mob…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
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Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
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Hi, You have correctly identified the issue: AUCell's automatic threshold selection is conservative by design, aiming for specificity to…
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Answer: DESeq2 design for haplotype MPRA
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