Showing : gcRMA • reset
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1.5k
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zebrafish simpleaffy Error in FUN(X[[4]], ...) : subscript out of bounds
zebrafish cdf probe reposTools gcrma matchprobes simpleaffy zebrafish cdf probe gcrma
updated 20.3 years ago by ▴ 780 • written 20.3 years ago by ★ 1.4k
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1
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1.5k
views
zebrafish simpleaffy Error in FUN(X[[4]], ...) : subscript out of bounds
zebrafish cdf probe reposTools gcrma matchprobes simpleaffy zebrafish cdf probe gcrma
updated 20.3 years ago by ★ 1.4k • written 20.3 years ago by ★ 1.1k
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1.6k
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NA values
Normalization Cancer limma gcrma affyPLM limmaGUI plier Normalization Cancer limma gcrma
20.3 years ago Brooke-Powell, Elizabeth ▴ 170
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1
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1.2k
views
filtering for present calls
hgu133a gcrma hgu133a gcrma
updated 20.3 years ago by ▴ 280 • written 20.3 years ago by ▴ 10
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0
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781
views
Error in qc.affy(unnormalised, ...) : I'm sorry, I, do not know about chip type: moe430acdf
limma gcrma matchprobes simpleaffy limma gcrma matchprobes simpleaffy
20.3 years ago Dan Frampton ▴ 10
0
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0
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968
views
GCRMA on MOE430 2.0
Normalization vsn gcrma Normalization vsn gcrma
20.3 years ago wefelmeyer@web.de ▴ 20
0
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1
reply
1.4k
views
Error in qc.affy(unnormalised, ...) : I'm sorry, I do not know about chip type: moe430acdf
GO moe430a cdf reposTools limma gcrma matchprobes siggenes simpleaffy GO moe430a cdf
updated 20.3 years ago by ★ 1.4k • written 20.3 years ago by ★ 1.1k
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0
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1.0k
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Error in qc.affy(unnormalised, ...) : I'm sorry, I do not know about chip type: moe430acdf
GO moe430a cdf reposTools limma gcrma matchprobes siggenes simpleaffy GO moe430a cdf
20.4 years ago Dick Beyer ★ 1.4k
0
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1
reply
1.3k
views
simpleAffy, custom chip error
Microarray Cancer cdf probe Biobase affy gcrma matchprobes simpleaffy Microarray Cancer
updated 20.4 years ago by ★ 1.1k • written 20.4 years ago by ▴ 10
0
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6
replies
1.6k
views
GCRMA error
gcrma gcrma
20.5 years ago Puhong Gao ▴ 140
0
votes
1
reply
998
views
bg.correct.gcrma?
gcrma gcrma
updated 20.5 years ago by ▴ 410 • written 20.5 years ago by ▴ 340
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0
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963
views
remove probes - example script
cdf probe gcrma cdf probe gcrma
20.6 years ago Ariel Chernomoretz ▴ 380
0
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0
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1.2k
views
remove probes - code
cdf probe affy gcrma affyPLM cdf probe affy gcrma affyPLM
20.6 years ago Ariel Chernomoretz ▴ 380
0
votes
0
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776
views
remove probes - GCRMA 1.1.3 weird behavior
cdf probe gcrma cdf probe gcrma
20.6 years ago Ariel Chernomoretz ▴ 380
0
votes
4
replies
1.5k
views
Quantile normalization without using affyBatch
Normalization cdf gcrma Normalization cdf gcrma
updated 20.6 years ago by ▴ 60 • written 20.6 years ago by ▴ 60
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8
replies
2.1k
views
Tiling array application
probe affy gcrma probe affy gcrma
20.6 years ago Shinhan Shiu ▴ 60
0
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3
replies
1.4k
views
gcrma problem
Microarray Cancer probe gcrma ASSIGN Microarray Cancer probe gcrma ASSIGN
updated 20.6 years ago by 68k • written 20.6 years ago by ▴ 120
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8
replies
1.7k
views
gcrma problem
gcrma gcrma
20.6 years ago Wenqiong Chen ▴ 120
0
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0
replies
781
views
What are the justPlier 4 processing steps?
Normalization affy gcrma Normalization affy gcrma
20.6 years ago Dick Beyer ★ 1.4k
0
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0
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916
views
simpleaffy finds QC problem, now what?
Normalization gcrma Normalization gcrma
20.6 years ago Anand C. Patel ▴ 100
0
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1
reply
1.1k
views
plier crashes with 51 CEL files
gcrma PROcess plier gcrma PROcess plier
20.6 years ago Adaikalavan Ramasamy ★ 1.8k
0
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3
replies
1.2k
views
suggestion : new object for exprSet
Preprocessing gcrma Preprocessing gcrma
updated 20.6 years ago by ★ 7.4k • written 20.7 years ago by ★ 1.8k
0
votes
1
reply
1.1k
views
GCRMA: low intensity exprs estimates / pval distributions
gcrma gcrma
20.7 years ago Matthew Hannah ▴ 940
0
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1
reply
1.1k
views
gcrma() and get() -- oops, 2nd try [sorry for 1st bogus send]
cdf probe gcrma cdf probe gcrma
updated 20.7 years ago by ▴ 410 • written 20.7 years ago by ▴ 180
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0
replies
850
views
gcrma() and get()
cdf probe gcrma cdf probe gcrma
20.7 years ago Richard Finney ▴ 180
0
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1
reply
1.2k
views
Time course experiment in Limma
limma gcrma limma gcrma
updated 20.7 years ago by 53k • written 20.7 years ago by ▴ 150
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0
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1.1k
views
Can't normalize with alternative affy CDF environment
Annotation Normalization Preprocessing cdf affy gcrma Annotation Normalization cdf affy
20.7 years ago Ken Termiso ▴ 250
0
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6
replies
1.4k
views
RMA verse GCRMA
Normalization gcrma Normalization gcrma
updated 20.7 years ago by ★ 13k • written 20.7 years ago by ▴ 810
0
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1
reply
742
views
affylmGUI and annotate problem?
Annotation gcrma Annotation gcrma
updated 20.8 years ago by 68k • written 20.8 years ago by ▴ 100
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2
replies
1.3k
views
GCRMA error
gcrma gcrma
20.8 years ago Dion Whitehead ▴ 50
0
votes
0
replies
886
views
affylmGUI - feedback, questions
gcrma GeneSpring affylmGUI gcrma GeneSpring affylmGUI
20.8 years ago SteffenMöller ▴ 30
0
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0
replies
2.1k
views
RMA normalization,which samples should be normalized together
Normalization probe affy limma gcrma DOSE Normalization probe affy limma gcrma DOSE
20.8 years ago Dipl.-Ing. Johannes Rainer ▴ 430
0
votes
1
reply
725
views
paeg1aprobe
cdf probe gcrma cdf probe gcrma
updated 20.8 years ago by ★ 7.4k • written 20.8 years ago by ★ 1.3k
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0
replies
1.2k
views
mas5call select genes
affy gcrma simpleaffy affy gcrma simpleaffy
20.8 years ago Naomi Altman ★ 6.0k
0
votes
1
reply
894
views
gcrma 1.1.3 vs. gcrma 1.1.0
mgu74av2 cdf probe gcrma mgu74av2 cdf probe gcrma
updated 20.8 years ago by ▴ 410 • written 20.8 years ago by ▴ 10
0
votes
1
reply
810
views
Logged or unlogged data for multtest and limma?
limma gcrma limma gcrma
updated 20.8 years ago by 68k • written 20.8 years ago by ▴ 250
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0
replies
1.0k
views
Custom CDF files
ChipName cdf probe makecdfenv gcrma ChipName cdf probe makecdfenv gcrma
20.8 years ago Ken Simpson ▴ 70
0
votes
1
reply
937
views
Scaling GCRMA intesities
probe gcrma probe gcrma
updated 20.8 years ago by ▴ 410 • written 20.8 years ago by ▴ 40
0
votes
1
reply
932
views
GCRMA question
gcrma gcrma
updated 20.8 years ago by ▴ 210 • written 20.8 years ago by ▴ 40
0
votes
3
replies
1.3k
views
hgu133_plus_2?
Clustering gcrma Clustering gcrma
updated 20.8 years ago by ▴ 150 • written 20.8 years ago by ▴ 10
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3
replies
1.2k
views
gcrma
gcrma gcrma
20.9 years ago Lana Schaffer ★ 1.3k
0
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0
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1.1k
views
Re: HGU95a and HGU95av2 with gcrma and combineAffybatch
hgu95a hgu95av2 cdf gcrma hgu95a hgu95av2 cdf gcrma
20.9 years ago Vincent Detours ▴ 80
0
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1
reply
1.0k
views
GCRMA and Affymetrix spikeIn hgu133a
probe gcrma probe gcrma
updated 20.9 years ago by ▴ 360 • written 20.9 years ago by ▴ 500
0
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1
reply
757
views
differential expression test
gcrma gcrma
updated 20.9 years ago by 53k • written 20.9 years ago by ▴ 250
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0
replies
1.0k
views
mas5, gcrma, rma
gcrma gcrma
21.0 years ago Auer Michael ▴ 250
0
votes
4
replies
2.7k
views
HGU95a and HGU95av2 with gcrma
hgu95a hgu95av2 cdf gcrma hgu95a hgu95av2 cdf gcrma
updated 21.0 years ago by ★ 13k • written 21.0 years ago by ▴ 80
0
votes
1
reply
861
views
Matchprobe package
cdf probe gcrma cdf probe gcrma
updated 21.0 years ago by ★ 13k • written 21.0 years ago by ▴ 120
0
votes
0
replies
667
views
different gcrma output on Linux and windows
gcrma gcrma
21.0 years ago Vladimir.Morozov@ari.altanapharma.com ▴ 10
0
votes
0
replies
771
views
gcrma - all low value output - error somewhere?
cdf affy gcrma matchprobes cdf affy gcrma matchprobes
21.0 years ago Matthew Hannah ▴ 940
0
votes
8
replies
1.8k
views
gcrma output id
affy gcrma affy gcrma
21.0 years ago Dianjing Guo ▴ 90
406 results • Page 6 of 9
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Comment: Save the Date: BioC2026 by eja.gsssssswwse.r.m • 0
Que notícia incrivel sobre o BioC2026 Para quem gosta de aproveitar o conteudo online, também e possvel Baixar [snaptube versão antiga][1] …
Comment: Ensembl 115 has been released! by eja.gsssssswwse.r.m • 0
Keeping up with Ensembls latest release ensures access to cutting-edge genomic information. For those balancing research and leisure, a mob…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Answer: gene Set with high AUC score but no cells assigned to cell type by Kevin Blighe ★ 4.0k
Hi, You have correctly identified the issue: AUCell's automatic threshold selection is conservative by design, aiming for specificity to…
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
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