Showing : gcRMA • reset
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gcrma.bg.transformation missing
gcrma gcrma
updated 21.0 years ago by ▴ 410 • written 21.0 years ago by ▴ 940
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1.0k
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Details on gcrma
gcrma gcrma
updated 21.1 years ago by ★ 2.3k • written 21.1 years ago by ▴ 540
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3
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Selecting p-value cutoffs for differential expression
limma gcrma limma gcrma
updated 21.1 years ago by ▴ 20 • written 21.2 years ago by ▴ 940
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[Fwd: Re: using gcrma in expresso]
gcrma gcrma
21.1 years ago echang4@life.uiuc.edu ▴ 110
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RE: Normalising divergent samples.
Microarray Normalization affy limma gcrma Microarray Normalization affy limma gcrma
21.1 years ago Matthew Hannah ▴ 940
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Metadata for Atgenome1 array
cdf probe gcrma cdf probe gcrma
21.1 years ago andy phillips RRes-Roth ▴ 10
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2
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1.4k
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SE in RMA and GCRMA
gcrma gcrma
updated 21.2 years ago by ▴ 410 • written 21.2 years ago by ▴ 120
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2
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1.1k
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matchprobes for GCRMA
probe affy gcrma matchprobes probe affy gcrma matchprobes
updated 21.2 years ago by ★ 1.8k • written 21.2 years ago by ▴ 10
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1
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1.5k
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Normalising divergent samples.
Microarray Normalization affy limma gcrma Microarray Normalization affy limma gcrma
updated 21.2 years ago by ▴ 620 • written 21.2 years ago by ▴ 940
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2
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Expression levels in GCRMA and MAS5.0 and cut-off
affy limma gcrma affy limma gcrma
21.2 years ago Jordi Altirriba Gutiérrez ▴ 350
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931
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high poportion of identical expression measure with RMA and 3 arrays
hu6800 affy gcrma hu6800 affy gcrma
21.2 years ago Adaikalavan Ramasamy ★ 1.8k
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3
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3.2k
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A question about MAS5 vs RMA vs GCRMA
affy gcrma affy gcrma
updated 21.2 years ago by ▴ 110 • written 21.2 years ago by ▴ 140
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1
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1.0k
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gcrma background
gcrma gcrma
updated 21.2 years ago by ▴ 410 • written 21.2 years ago by ▴ 380
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GCRMA/RMA bimodal distribution
drosgenome1 limma gcrma drosgenome1 limma gcrma
21.2 years ago Matthew Hannah ▴ 940
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5
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1.6k
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GCRMA/RMA bimodal distribution
gcrma gcrma
updated 21.2 years ago by ★ 6.0k • written 21.2 years ago by ▴ 940
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2
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1.2k
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GCRMA fails with MOE430A Only
moe430a cdf probe gcrma PROcess moe430a cdf probe gcrma PROcess
updated 21.2 years ago by 68k • written 21.2 years ago by ▴ 340
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1.1k
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abnormal distribution after GCRMA
gcrma gcrma
updated 21.2 years ago by ▴ 410 • written 21.2 years ago by ▴ 720
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1.0k
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probe length was:RE: GCRMA backgrounds?
SNP Cancer affy gcrma SNP Cancer affy gcrma
updated 21.3 years ago by ▴ 810 • written 21.3 years ago by ▴ 80
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1.2k
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probe length was:RE: GCRMA backgrounds?
SNP probe affy gcrma SNP probe affy gcrma
21.3 years ago Paul Boutros ▴ 340
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894
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probe length was:RE: GCRMA backgrounds?
SNP affy gcrma SNP affy gcrma
updated 21.3 years ago by ▴ 810 • written 21.3 years ago by ▴ 80
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4
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1.6k
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GCRMA backgrounds?
SNP affy gcrma SNP affy gcrma
updated 21.3 years ago by ▴ 940 • written 21.3 years ago by ▴ 60
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705
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GCRMA 1.0.0 vs 1.1.0
affy gcrma affy gcrma
21.3 years ago Caimiao Wei ▴ 100
0
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0
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812
views
gcrma.bg.transformation missing in gcrma 1.1.0
gcrma gcrma
21.3 years ago Jeffrey Rasmussen ▴ 100
0
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0
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787
views
gcrma
gcrma gcrma
21.3 years ago Rafael A. Irizarry ★ 2.3k
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1.1k
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2x3 ANOVA
Microarray multtest gcrma factDesign PROcess Microarray multtest gcrma factDesign PROcess
21.3 years ago Jeff Lande ▴ 110
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3
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3.1k
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what normalization method does mas5 use
Normalization GO affy gcrma plier Normalization GO affy gcrma plier
updated 21.3 years ago by ▴ 100 • written 21.3 years ago by ▴ 10
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866
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Questions related to processing large dataset in batches
Microarray Normalization Cancer hgu133plus2 probe affy gcrma PROcess Microarray Cancer
21.4 years ago James W. MacDonald 68k
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1
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1.3k
views
How to create a custom CDF ?
mgu74av2 cdf probe affy makecdfenv gcrma mgu74av2 cdf probe affy makecdfenv gcrma
updated 21.4 years ago by ★ 1.1k • written 21.4 years ago by ▴ 10
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0
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880
views
Re: RMA vs VSN
Normalization Preprocessing Cancer probe affy vsn gcrma Normalization Preprocessing probe
21.4 years ago Wolfgang Huber ★ 13k
0
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968
views
large data set under 32 bits architecture
GO affy gcrma GO affy gcrma
updated 21.4 years ago by ▴ 680 • written 21.4 years ago by ▴ 720
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4
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1.5k
views
win 64bit and general BioC computing power?
GO Clustering affy limma gcrma PROcess GO Clustering affy limma gcrma PROcess
updated 21.4 years ago by ▴ 360 • written 21.4 years ago by ▴ 940
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1
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944
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large amount of slides/ out of memory
hgu133a gcrma hgu133a gcrma
updated 21.4 years ago by 68k • written 21.4 years ago by ▴ 210
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947
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gcrma in affylmGUI
gcrma affylmGUI limmaGUI gcrma affylmGUI limmaGUI
21.5 years ago James Wettenhall ▴ 1000
0
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0
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874
views
Varying intensity histograms for GCRMA
gcrma gcrma
21.5 years ago Andrew Harrison ▴ 60
0
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1
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1.0k
views
gcrma and other normalizations
Normalization gcrma Normalization gcrma
updated 21.5 years ago by ▴ 90 • written 21.5 years ago by ▴ 500
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2
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1.0k
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gcrma in affylmGUI
gcrma limmaGUI gcrma limmaGUI
updated 21.5 years ago by ▴ 1000 • written 21.5 years ago by ▴ 90
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1
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1.4k
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number of Replicates - Fold change vs Limma or Siggenes/SAM
Preprocessing gcrma Preprocessing gcrma
updated 21.5 years ago by ▴ 30 • written 21.5 years ago by ▴ 90
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0
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852
views
(GC)RMA when there are BIG treatment effects.
multtest affy gcrma multtest affy gcrma
21.5 years ago Matthew Hannah ▴ 940
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1
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1.8k
views
Bioconductor 1.4 released
Proteomics Annotation Normalization GO Cancer CGH pamr gcrma gpls affyPLM webbioc bim
updated 21.5 years ago by ★ 13k • written 21.5 years ago by ▴ 810
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809
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Normalization of Intensities
gcrma marray gcrma marray
21.5 years ago Naomi Altman ★ 6.0k
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0
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835
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loading exprSet from a file
gcrma gcrma
21.5 years ago raffaele calogero ▴ 500
0
votes
1
reply
889
views
rma and gcrma do not work in R 1.9.0
affy gcrma affy gcrma
updated 21.5 years ago by ★ 1.1k • written 21.5 years ago by ▴ 10
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0
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792
views
error in gcrma background correction
gcrma gcrma
21.5 years ago raffaele calogero ▴ 500
0
votes
0
replies
964
views
How to create customized probe package for GCRMA?
cdf probe affy makecdfenv gcrma cdf probe affy makecdfenv gcrma
21.5 years ago Kun Zhang ▴ 10
0
votes
0
replies
749
views
algorithms and explanations
Microarray probe gcrma Microarray probe gcrma
21.5 years ago Spencer Spratt ▴ 10
0
votes
0
replies
1.0k
views
gcrma 1.0.0 vs 1.0.6
mgu74av2 cdf gcrma mgu74av2 cdf gcrma
21.5 years ago Dick Beyer ★ 1.4k
0
votes
4
replies
1.8k
views
Question on afy/gcrma probe indexes
probe affy gcrma probe affy gcrma
updated 21.6 years ago by ▴ 220 • written 21.6 years ago by ▴ 20
0
votes
4
replies
1.2k
views
Two rma questions
affy gcrma affy gcrma
updated 21.6 years ago by 68k • written 21.6 years ago by ▴ 180
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votes
0
replies
818
views
gcrma.bg.transformation missing in gcrma 1.0.6
gcrma gcrma
21.6 years ago Dick Beyer ★ 1.4k
0
votes
1
reply
872
views
gcrma.1.0.0 vs gcrma.1.0.6 vs justGCRMA.1.0.6
cdf gcrma cdf gcrma
updated 21.6 years ago by 68k • written 21.6 years ago by ★ 1.4k
406 results • Page 7 of 9
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Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif by Matthew Thornton ▴ 380
WOW! Thank you so much for the information. I will do this.
Comment: "Watched Tags" are being erased rather than updated by RalphSavage99 • 0
Thanks for sharing https://github.com/Bioconductor/support.bioconductor.org/issues/112
Answer: Add additional maintainer for MOFA2 by shepherl 4.2k
These requests are best on the bioc-devel @ r-project.org or a request to maintainer @ bioconductor.org -- We would ideally need the curre…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
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Answer: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
Using edgeR or DESeq2 to analyze allele-specific expression?
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
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