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genbankr
•
reset
0
votes
0
replies
451
views
genbankr throwing C stack usage error when reading in files >500Kb
genbankr
2.5 years ago
Lauren
• 0
0
votes
3
replies
1.5k
views
Retrieve GenBank file using RefSeq ID
genbankr
updated 3.4 years ago by
Nicholas Cooley
• 0 • written 3.4 years ago by
heiko_kin
▴ 60
0
votes
4
replies
1.2k
views
Gene information (GRanges + sequence) to GenBank
granges
genomic ranges
genbankr
ensembldb
updated 3.5 years ago by
James W. MacDonald
65k • written 3.5 years ago by
biomiha
▴ 20
0
votes
0
replies
687
views
readGenbank can't handle multiple contigs?
genbankr
parsing
4.0 years ago
sean.c.m.booth
• 0
0
votes
0
replies
637
views
genbankr problem while parsing gb file
genbankr
4.7 years ago
jeyp
• 0
0
votes
0
replies
838
views
Error in parseGenBank
genbankr
parseGenBank
gbk
error
4.8 years ago
ashley.dederich
• 0
0
votes
2
replies
860
views
Pulling Genbank Annotation Information via library(genbankr)
genbankr
genbank
annotation
5.7 years ago
story.benjamin
▴ 20
0
votes
1
reply
1.1k
views
genbankr fails when reading GBK file
genbankr
updated 6.1 years ago by
becker.gabriel
▴ 10 • written 6.4 years ago by
Monther Alhamdoosh
▴ 40
0
votes
1
reply
953
views
problem with genbankr
genbankr
updated 6.1 years ago by
becker.gabriel
▴ 10 • written 6.3 years ago by
inookaew
• 0
2
votes
1
reply
1.4k
views
Importing genbank entries for synthetic constructs
genbankr
updated 7.4 years ago by
becker.gabriel
▴ 10 • written 7.4 years ago by
Thomas Sandmann
▴ 90
10 results • Page
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Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Chris
• 0
Thanks Gordon for the advice! I ran fgsea, gsva and camera(), the most significant pathways are different. For the purpose of finding pathw…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…
Comment: DNAString: Standard checksum function?
by
Henrik Bengtsson
★ 2.4k
For completeness: SEGUID v2 (https://www.seguid.org/), implemented in CRAN package **[seguid](https://cran.r-project.org/package=seguid)*…
Comment: fgsea significant result
by
Chris
• 0
Thanks ATpoint! Setting a fixed seed can reproduce the same result. However, if someone else analyze the same data with different seed, the…
Comment: SGSeq: moving toward diffex from SGSeq analysis
by
Sara
• 0
Thank you for your response. I have another question about saving the sgvc result as a CSV file. I would appreciate your help, please. ``` …
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Handling multiple differential expression comparisons
Answer: fgsea significant result
Answer: fgsea significant result
package goseq seems to be not available on the latest version of R
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