Showing : gene expression • reset
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Help with generating network from gene expression data
gene expression network cytoscape
7.9 years ago torgeirous • 0
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9
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LIMMA for paired analysis with adjustment for confounding continuous variables
limma gene expression confounding adjustment paired
10.1 years ago Loodramon • 0
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sva and svaseq for unsupervised analysis of expression data
sva combat gene expression batch effect rnaseq
updated 10.3 years ago by ▴ 650 • written 10.3 years ago by ▴ 10
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barplot with ggplot2 for gene expression
ggplot2 barplot gene expression gene expression
updated 10.3 years ago by 68k • written 10.3 years ago by ▴ 130
4 results • Page 1 of 1
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Answer: NUPOP usage by shepherl 4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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