Bioconductor Gene expression

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gene expression network cytoscape

8.0 years ago torgeirous • 0

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limma gene expression confounding adjustment paired

10.2 years ago Loodramon • 0

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sva combat gene expression batch effect rnaseq

updated 10.3 years ago by Jeff Leek ▴ 650 • written 10.4 years ago by Farshad Farshidfar ▴ 10

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ggplot2 barplot gene expression gene expression

updated 10.4 years ago by James W. MacDonald 68k • written 10.4 years ago by alakatos ▴ 130

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Comment: Guitar R package requires update due to dependency GenomicFeatures by ferran.llobet.cabau ▴ 10

Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…

Comment: Ensembl plants at annotationHub? by Guido Hooiveld ★ 4.1k

Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…

Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by jtsy6383 • 0

Thanks for the reminder about DiffVar (for that project I ended up using GAMLSS in the end and haven't touched DiffVar since) and the alter…

Comment: Ensembl plants at annotationHub? by jwp48 • 0

Dear Johannes, Would it be possible to generate a EnsDb for the newest Medicago V5 genome release? Medicago truncatula A17 r5.0 This woul…

Answer: please provide a BibTeX citation for "Advanced Single-Cell Analysis with Biocond by Ludwig Geistlinger ▴ 80

When referring to the OSCA book including individual sub-books please cite the OSCA paper: Amezquita, R.A., Lun, A.T.L., Becht, E. et a…

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limma moderated t-statistics and B-statistics

Comment: Guitar R package requires update due to dependency GenomicFeatures

A: how to control age and gender effect in expression data using DESeq2

how to control age and gender effect in expression data using DESeq2

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