Showing : cytoscape • reset
1
vote
1
reply
809
views
Going back to default settings in RCy3
Cytoscape RCy3 RCy
updated 2.1 years ago by ▴ 30 • written 2.2 years ago by ▴ 90
3
votes
7
replies
2.8k
views
"Degree values are the same for all nodes in a network imported from WGCNA to Cytoscape using RCy3. Seeking insights and potential causes."
Cytoscape RCy3 Networkvisualization WGCNA
2.8 years ago Ortega-C ▴ 10
0
votes
0
replies
1.7k
views
WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape Heatmap heatmaps WGCNA
3.0 years ago gianni.drm • 0
0
votes
1
reply
1.2k
views
Importing Newick trees in Cytoscape by conversion to igraph via RCy3
RCy3 Cytoscape R Newick Bioconductor
updated 5.2 years ago by ▴ 30 • written 5.6 years ago by • 0
3
votes
4
replies
2.2k
views
Exporting graphNEL into Cytoscape using RCy3 fails with 'arguments imply differing number of rows'
RCy3 Cytoscape Rgraphviz GOstats
6.8 years ago Matthew Thornton ▴ 390
1
vote
0
replies
2.6k
views
Exploring upstream regulators (transcription factors, drugs, etc) of transcripts in R
microarray bioconductor cytoscape mapfromtranscripts
7.3 years ago lm795 ▴ 10
0
votes
0
replies
1.6k
views
Help with generating network from gene expression data
gene expression network cytoscape
8.1 years ago torgeirous • 0
6
votes
8
replies
11k
views
WGCNA export to cytoscape
wgcna cytoscape
updated 8.1 years ago by ▴ 60 • written 8.8 years ago by ▴ 60
0
votes
1
reply
1.8k
views
WGNA export to external software
WGCNA network visualization external software cytoscape
updated 8.4 years ago by ★ 3.0k • written 8.4 years ago by • 0
9 results • Page 1 of 1
Recent ...
Replies
Answer: Unable to create venndiagram using VennDiagram 1.5.1 package by kesha • 0
<a href=https://vavadacasinox.com/>vavadacasinox.com</a>
Comment: How to convert .raw data for use in xcms by a2a2asawhaa • 0
try converting your files to the older mzXML format, which remains highly stable for XCMS. While waiting for large datasets to process, you…
Comment: Which preprocessing steps are needed before running limpa? by miro165sabo • 0
Hi @gordonsmyth, thank you a lot for very fast and valuable response. I edited the question to provide more details.
Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ? by Gordon Smyth 53k
I tend to use dpcCN(), because it more robust than dpc() to experiments with lots of samples and big differences between samples. You coul…
Answer: Which preprocessing steps are needed before running limpa? by Gordon Smyth 53k
Please see the example limpa analyses given at <http://github.com/smythlab/limpa>, especially the kidney cancer case study. limpa does not…
Votes
Answer: Which preprocessing steps are needed before running limpa?
Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?
Answer: Which preprocessing steps are needed before running limpa?
Answer: Which preprocessing steps are needed before running limpa?
Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?
Awards • All
Scholar to Gordon Smyth 53k
Popular Question to Peter Hickey ▴ 760
Popular Question to Sean Davis 21k
Popular Question to James W. MacDonald 68k
Popular Question to shepherl 4.3k
Locations • All
USA, 31 minutes ago
India, 51 minutes ago
France, 1 hour ago
United States, 2 hours ago
India, 2 hours ago
Traffic: 1254 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6