Showing : cytoscape • reset
1
vote
1
reply
812
views
Going back to default settings in RCy3
Cytoscape RCy3 RCy
updated 2.1 years ago by ▴ 30 • written 2.2 years ago by ▴ 90
3
votes
7
replies
2.8k
views
"Degree values are the same for all nodes in a network imported from WGCNA to Cytoscape using RCy3. Seeking insights and potential causes."
Cytoscape RCy3 Networkvisualization WGCNA
2.8 years ago Ortega-C ▴ 10
0
votes
0
replies
1.7k
views
WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape Heatmap heatmaps WGCNA
3.0 years ago gianni.drm • 0
0
votes
1
reply
1.2k
views
Importing Newick trees in Cytoscape by conversion to igraph via RCy3
RCy3 Cytoscape R Newick Bioconductor
updated 5.2 years ago by ▴ 30 • written 5.6 years ago by • 0
3
votes
4
replies
2.2k
views
Exporting graphNEL into Cytoscape using RCy3 fails with 'arguments imply differing number of rows'
RCy3 Cytoscape Rgraphviz GOstats
6.8 years ago Matthew Thornton ▴ 390
1
vote
0
replies
2.7k
views
Exploring upstream regulators (transcription factors, drugs, etc) of transcripts in R
microarray bioconductor cytoscape mapfromtranscripts
7.4 years ago lm795 ▴ 10
0
votes
0
replies
1.6k
views
Help with generating network from gene expression data
gene expression network cytoscape
8.1 years ago torgeirous • 0
6
votes
8
replies
11k
views
WGCNA export to cytoscape
wgcna cytoscape
updated 8.1 years ago by ▴ 60 • written 8.8 years ago by ▴ 60
0
votes
1
reply
1.8k
views
WGNA export to external software
WGCNA network visualization external software cytoscape
updated 8.4 years ago by ★ 3.0k • written 8.4 years ago by • 0
9 results • Page 1 of 1
Recent ...
Replies
Comment: Question on processing compound protein groups in limpa by JKim • 0
Many thanks. I appreciate your advice.
Answer: Question on processing compound protein groups in limpa by Gordon Smyth 53k
Different people have different ways of dealing with compound protein groups. You could just leave them in the analysis, in which case limp…
Answer: Correct usage of limpa for protein input by Gordon Smyth 53k
limpa can work on protein-level quantifications, but they must be intensity-based and must be on the log scale. From what I read (<https://…
Comment: A problem occurs when running the monocle2 by a2a2hset32aa • 0
Troubleshooting monocle2 errors in R 4.5.1 often points to package incompatibilities, particularly with newer versions of igraph. For resea…
Comment: Deadline Extended: EuroBioC2026 Call for Abstracts by a2a2hset32aa • 0
Attending EuroBioC2026 is an excellent way for researchers to explore the intersection of technology and biology. For those seeking high qu…
Votes
Answer: Question on processing compound protein groups in limpa
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
A: Interpretaion of dendrogram height in WGCNA?
Awards • All
Popular Question to Dario Strbenac ★ 1.6k
Popular Question to chirag.parsania ▴ 10
Popular Question to Michael Love 43k
Popular Question to Dan Tenenbaum ★ 8.2k
Scholar to Gordon Smyth 53k
Locations • All
United States, 2 minutes ago
WEHI, Melbourne, Australia, 15 minutes ago
Germany, 16 minutes ago
Pakistan, 28 minutes ago
Belgium, 48 minutes ago
Traffic: 1136 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6