Bioconductor Confounding

Showing : confounding • reset

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edger confounding

updated 4.3 years ago by Aaron Lun ★ 28k • written 4.3 years ago by Victoria • 0

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979

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limma batch effect design matrix microarray confounding

6.4 years ago svlachavas ▴ 810

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2.3k

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limma voom continuous interactions confounding

7.0 years ago lanhuong ▴ 20

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limma gene expression confounding adjustment paired

7.9 years ago Loodramon • 0

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1.5k

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limma GSA confounding within-pair analysis 450k

8.4 years ago Aileen Bahl ▴ 10

5 results • Page 1 of 1

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Comment: DataFrame Construction With Non-standard Column by ATpoint ★ 3.4k

Out of interest, `SimpleList()` works without `I()`, why is that?

Answer: DataFrame Construction With Non-standard Column by Hervé Pagès 16k

You need to protect the list by wrapping it in `I()`, otherwise the `DataFrame()` constructor interprets it as a list of 3 columns (so it t…

Comment: Speeding up of DelayedArray::write_block() by Koki ▴ 10

Thank you, I have a very clear understanding of the situation. > COO_Sparse_HDF5RealizationSink(), writeHDF5SparseArray(), COO_H5SparseArr…

Comment: Speeding up of DelayedArray::write_block() by Koki ▴ 10

There are a few places inside my `DelayedTensor` package that use `SparseArraySeed`. Will these stop working in next coming BioC 3.18, whe…

Comment: DelayedArray::read_sparse_block by Hervé Pagès 16k

No. But I will need to modify the `write_block()` method for TENxRealizationSink implemented in **HDF5Array** to make it handle blocks that…

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Answer: Further analysis after limma regression output

A: collapseReplicates in DESeq2

Answer: DataFrame Construction With Non-standard Column

Steps needed to change design (relevel factors) in DESeq2

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