Bioconductor Geneanswers

Showing : geneanswers • reset

votes

replies

1.1k

views

goProfiles GeneAnswers goProfiles GeneAnswers

updated 11.2 years ago by Marc Carlson ★ 7.2k • written 11.2 years ago by Jose M Garcia Manteiga ▴ 310

vote

replies

1.9k

views

geneanswers metagenome kegg

updated 7.8 years ago by Guangchuang Yu ★ 1.2k • written 9.5 years ago by francesca.defilippis ▴ 100

votes

replies

1.3k

views

Pathways graph Rredland GeneAnswers Pathways graph Rredland GeneAnswers

13.3 years ago laurent jacob ▴ 100

votes

1.3k

views

Rgraphviz GeneAnswers Rgraphviz GeneAnswers

updated 13.3 years ago by Manca Marco PATH ▴ 340 • written 13.3 years ago by john herbert ▴ 10

votes

replies

1.2k

views

GO GeneAnswers GO GeneAnswers

updated 12.6 years ago by James W. MacDonald 65k • written 12.6 years ago by Ou, Jianhong ★ 1.3k

votes

replies

834

views

geneanswers

updated 7.4 years ago by Gordon Smyth 50k • written 7.4 years ago by emiliomastriani • 0

votes

replies

1.4k

views

GeneAnswers annotation Arabidopsis GO

8.9 years ago lhuang7 ▴ 50

votes

replies

858

views

GO GeneAnswers GO GeneAnswers

12.6 years ago Guest User ★ 13k

votes

replies

914

views

GO GeneAnswers GO GeneAnswers

12.1 years ago Zhi Zhang ▴ 70

votes

replies

961

views

Annotation GO oligo GeneAnswers Annotation GO oligo GeneAnswers

11.5 years ago Ingrid Mercier ▴ 60

votes

replies

954

views

Network GeneAnswers Network GeneAnswers

11.5 years ago Enrico Ferrero ▴ 10

11 results • Page 1 of 1

Recent ...

Replies

Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70

Hello. Thanks for the reply. Sorry about this. My testing is telling me that 1 is the default (a gap), not -1 (1bp overlap). Negative …

Comment: Differences in differential analysis methods for RNA-Seq by ATpoint ★ 4.1k

> I am just re-processing due to being uncertain about how they used the edgeR analysis to reach gene level edgeR devs published something…

Comment: Differences in differential analysis methods for RNA-Seq by james.zhang20 • 0

Thanks for the explanations, it has helped clarify some things. Unfortunately, I am working from an early access public dataset (https://do…

Answer: Deseq2 and Normalization of RNA sequencing data by ATpoint ★ 4.1k

There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …

Comment: Differences in differential analysis methods for RNA-Seq by ATpoint ★ 4.1k

MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…

Votes

A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

SPIA plotP giving error

Awards • All

Popular Question to rohitsatyam102 ▴ 20