Bioconductor Genelendatabase

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848

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geneLenDataBase ChAMP

updated 13 months ago by shepherl 4.2k • written 13 months ago by Fang • 0

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693

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geneLenDataBase

updated 3.4 years ago by Kevin Blighe ★ 4.0k • written 3.4 years ago by Prerna • 0

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2.1k

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genelendatabase goseq

updated 9.5 years ago by Nadia Davidson ▴ 320 • written 9.6 years ago by Mehmet Ilyas Cosacak • 0

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3.6k

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goseq geneLenDataBase bioclite rstudio

updated 9.9 years ago by Martin Morgan 25k • written 9.9 years ago by amyfm ▴ 10

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1.6k

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goseq genelendatabase

10.1 years ago FeiYian Yoong ▴ 30

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2.4k

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geneLenDataBase mm10

updated 10.6 years ago by Hervé Pagès 16k • written 10.6 years ago by Robert K. Bradley ▴ 40

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Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by abaed • 0

Exactly, MDS was computed on logCPM values from `cpm(x, log=TRUE)` after running `calcNormFactors(method="TMMwsp")` on the DGE object. I al…

Answer: GO.db and others package Download failure by James W. MacDonald 68k

You didn't get an error. You didn't even get a warning! You simply got a message saying that two (unrelated) packages were not updated. As …

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by Gordon Smyth 53k

MDS of what quantity? LogCPM from `cpm()`? I don't have a definitive answer, but my feeling that is that library size effects are to be ex…

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by abaed • 0

Apologies for not clarifying earlier, you're right: it is a PCA, not an MDS. In local machine, computing the MDS takes quite a long time, P…

Answer: replace cat with message in glmTreat when lfc = 0 by Gordon Smyth 53k

Yes, I agree that the message should be a `message` rather than `cat` output, and the message is perhaps not needed at all, because anyone …