Showing : genomeintervals • reset
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Using Granges to find overlapping pairs at exactly 10kb distance
genomeIntervals GenomicRanges
6 weeks ago gshweta95 • 0
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1.4k
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GRanges object from gene list
granges bed genomicranges genomeintervals deseq2
6.3 years ago rbronste ▴ 60
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1.6k
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Extracting UTRs from exon and CDS data
genomeintervals UTRs exons CDS GenomicRanges
updated 6.8 years ago by ★ 11k • written 6.8 years ago by ▴ 110
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What is the main difference between nclist and intervaltree algorithm in GenomicRanges packages ?
nclist genomeintervals
updated 8.3 years ago by 16k • written 8.3 years ago by ▴ 80
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1.2k
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cannot load genomeIntervals package
genomeIntervals
updated 8.9 years ago by ▴ 320 • written 9.1 years ago by • 0
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8
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1.7k
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Bug: readGff3 isRightOpen should be FALSE
genomeintervals
updated 8.9 years ago by ▴ 320 • written 8.9 years ago by • 0
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2.6k
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biocLite("TxDb.Hsapiens.UCSC.hg19.knownGene") fails
BSgenome hexbin BSgenome IRanges genomeIntervals GenomicRanges girafe Rsamtools HiTC HiTC
updated 11.2 years ago by ★ 8.2k • written 11.2 years ago by ▴ 100
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convert "Genome_intervals_stranded" to "Genome_intervals"? (girafe)
Annotation convert genomeIntervals Annotation convert genomeIntervals
12.2 years ago delhomme@embl.de ★ 1.2k
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gff files: how to tell if right-open interval convention used?
genomeIntervals genomeIntervals
updated 13.1 years ago by 16k • written 13.1 years ago by ▴ 50
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stranded findOverlaps
Sequencing Annotation GO rtracklayer IRanges genomeIntervals Sequencing Annotation GO
14.3 years ago Robert Castelo ★ 3.3k
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I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?
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If you fit a cell means model (without an intercept), you will have to construct contrasts using `makeContrasts` and fit them using `contra…
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Thanks a lot Peter, We solved the problem, IT had implemented a policy of RAM usage that started a conflict with any RAM-hungry process, m…
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This support site is meant to help people with technical questions about Bioconductor packages. The `meffil` package is not Bioconductor, n…
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Zuguang Gu submitted both of those packages as part of the current release, and I submitted a PR for `minfi` so it will now distinguish the…
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