3.3 years ago
rbronste
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60
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3
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517
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2
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926
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updated 3.8 years ago by
Michael Lawrence
11k
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written 3.8 years ago by
rubi
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90
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2
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updated 5.3 years ago by
Hervé Pagès
14k
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written 5.3 years ago by
Jurat Shahidin
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70
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1
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727
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updated 5.9 years ago by
Nicolas Delhomme
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320
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written 6.1 years ago by
mhz
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0
1
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8
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898
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updated 5.9 years ago by
Nicolas Delhomme
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320
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written 5.9 years ago by
sjackman
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updated 8.2 years ago by
Dan Tenenbaum
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written 8.2 years ago by
Wim Kreinen
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537
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553
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updated 10.1 years ago by
Hervé Pagès
14k
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written 10.1 years ago by
Julien Gagneur
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50
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11.3 years ago
Robert Castelo
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2.7k
Recent ...
Replies
Comment: DiffBind reporting error
by
Rory Stark
★
3.8k
If you could give me access to your `dbind_de` object, I can have a look at what is going on. it would help to see the sequence of calls yo…
Comment: limma - removing samples?
by
RMP87
•
0
Thank you very much for the explanation. Making it more precise. Could I analyze and normalize all samples from a dataset even though I had…
Comment: DESeq2, why are the signs of EDASeq offsets flipped compared to CQN ?
by
Saulius
•
0
Yes - I think you are right once more. Thanks for taking so much time to look into this.
Size factors come in twice in the code of `cqn`: …
Comment: DESeq2, why are the signs of EDASeq offsets flipped compared to CQN ?
by
Michael Love
32k
Re: (2), I read the code and docs as adding in library size scaling, not removing.
This is because, after (1) the offset is in the directi…
Comment: DESeq2, why are the signs of EDASeq offsets flipped compared to CQN ?
by
Saulius
•
0
Yes - this is the key I now realise.
The last section of the vignette does not really explain how exactly `glm.offset` is different, nor s…
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