Showing : genomeintervals • reset
0
votes
0
replies
816
views
Using Granges to find overlapping pairs at exactly 10kb distance
genomeIntervals GenomicRanges
21 months ago gshweta95 • 0
2
votes
3
replies
1.9k
views
GRanges object from gene list
granges bed genomicranges genomeintervals deseq2
8.0 years ago rbronste ▴ 60
2
votes
1
reply
2.1k
views
Extracting UTRs from exon and CDS data
genomeintervals UTRs exons CDS GenomicRanges
updated 8.5 years ago by ★ 11k • written 8.5 years ago by ▴ 110
3
votes
2
replies
1.8k
views
What is the main difference between nclist and intervaltree algorithm in GenomicRanges packages ?
nclist genomeintervals
updated 10.0 years ago by 16k • written 10.0 years ago by ▴ 80
0
votes
1
reply
1.5k
views
cannot load genomeIntervals package
genomeIntervals
updated 10.6 years ago by ▴ 320 • written 10.8 years ago by • 0
1
vote
8
replies
2.4k
views
Bug: readGff3 isRightOpen should be FALSE
genomeintervals
updated 10.6 years ago by ▴ 320 • written 10.6 years ago by • 0
0
votes
1
reply
3.0k
views
biocLite("TxDb.Hsapiens.UCSC.hg19.knownGene") fails
BSgenome hexbin BSgenome IRanges genomeIntervals GenomicRanges girafe Rsamtools HiTC HiTC
updated 12.8 years ago by ★ 8.2k • written 12.8 years ago by ▴ 100
0
votes
0
replies
1.2k
views
convert "Genome_intervals_stranded" to "Genome_intervals"? (girafe)
Annotation convert genomeIntervals Annotation convert genomeIntervals
13.9 years ago delhomme@embl.de ★ 1.2k
0
votes
1
reply
1.3k
views
gff files: how to tell if right-open interval convention used?
genomeIntervals genomeIntervals
updated 14.8 years ago by 16k • written 14.8 years ago by ▴ 50
0
votes
0
replies
1.4k
views
stranded findOverlaps
Sequencing Annotation GO rtracklayer IRanges genomeIntervals Sequencing Annotation GO
16.0 years ago Robert Castelo ★ 3.4k
10 results • Page 1 of 1
Recent ...
Replies
Comment: Clarification on counting in Rsubread (featureCounts) by Gordon Smyth 53k
Your follow-up question is very much wider than the first, and is essentially a research question rather a software question. As one of the…
Comment: Error in creating BSGenome package by Nguyen • 0
I keep running into this error, please help: ``` Writing all sequences to './BSgenome.Panubis.NCBI.Panubis1.0/inst/extdata/single_sequenc…
Comment: Joining different datasets and analyzing using the group-specific condition effe by James W. MacDonald 68k
There is an example of how you can do this in the [DESeq vignette][1]. An alternative would be to fit a linear mixed model using the `vari…
Comment: Joining different datasets and analyzing using the group-specific condition effe by jason.chai • 0
@mikelove Could I please ask if a similar method would work my set of samples? I have 255 samples which have been generated from 76 subject…
Comment: Clarification on counting in Rsubread (featureCounts) by Luca • 0
Thanks to both of you for your helpful suggestions. The counting was already strand-specific at both the exon and gene levels. I resolved …
Votes
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Answer: Clarification on counting in Rsubread (featureCounts)
Comment: Clarification on counting in Rsubread (featureCounts)
C: ControlGenes/ housekeeping genes Deseq2
Answer: Clarification on counting in Rsubread (featureCounts)
Awards • All
Popular Question to Lluís Revilla Sancho ▴ 760
Commentator to James W. MacDonald 68k
Great Question to fl ▴ 20
Popular Question to Gordon Smyth 53k
Popular Question to Aleena_Ensembl ▴ 30
Locations • All
European Union, just now
Barcelona, Spain, 22 minutes ago
United States, 33 minutes ago
WEHI, Melbourne, Australia, 35 minutes ago
Seattle, WA, United States, 50 minutes ago
Traffic: 892 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6