Biostar Genomeintervals

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589

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granges bed genomicranges genomeintervals deseq2

3.7 years ago rbronste ▴ 60

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980

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genomeintervals UTRs exons CDS GenomicRanges

updated 4.1 years ago by Michael Lawrence 11k • written 4.1 years ago by rubi ▴ 90

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826

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nclist genomeintervals

updated 5.6 years ago by Hervé Pagès 15k • written 5.6 years ago by Jurat Shahidin ▴ 70

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792

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genomeIntervals

updated 6.2 years ago by Nicolas Delhomme ▴ 320 • written 6.5 years ago by mhz • 0

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982

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genomeintervals

updated 6.2 years ago by Nicolas Delhomme ▴ 320 • written 6.3 years ago by sjackman • 0

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1.9k

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BSgenome hexbin BSgenome IRanges genomeIntervals GenomicRanges girafe Rsamtools HiTC HiTC

updated 8.5 years ago by Dan Tenenbaum ★ 8.2k • written 8.5 years ago by Wim Kreinen ▴ 100

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576

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Annotation convert genomeIntervals Annotation convert genomeIntervals

9.6 years ago delhomme@embl.de ★ 1.2k

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607

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genomeIntervals genomeIntervals

updated 10.5 years ago by Hervé Pagès 15k • written 10.5 years ago by Julien Gagneur ▴ 50

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641

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Sequencing Annotation GO rtracklayer IRanges genomeIntervals Sequencing Annotation GO

11.6 years ago Robert Castelo ★ 2.7k

9 results • Page 1 of 1

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Comment: voom flips the sign relative to log(cpm) by Gordon Smyth 43k

Cross posted to Biostars https://www.biostars.org/p/9490039/

Answer: voom flips the sign relative to log(cpm) by Gordon Smyth 43k

The difference has nothing to do with limma or voom. On the right you applied TMM library size normalization. On the left you did no librar…

Answer: error: cannot execute 'f951': execvp: No such file or directory when downloading by Michael Love 34k

The answer is going to depend on how you installed R and Bioconductor, what OS and system you are on.

Comment: At least one covariate is confounded with batch! Please remove confounded covari by James W. MacDonald 58k

The error you get from `ComBat` comes from the test ``` qr(design)$rank < ncol(design) ``` And inside of `nonEstimable` is, as one might …

Comment: Understanding output of Negative Binomial in DESeq2 by swbarnes2 ▴ 850

Cross posted at Biostars: https://www.biostars.org/p/9490151/

Votes

Answer: Effect size using likelihood ratio test in DESeq2

Comment: ggtree install

Answer: Warning messages on Apple M1 BigSur

Comment: Use of coef() as a measure of effect size in a multiple regression using DESeq2

Answer: Log fold change interpretation of time series with Wald test

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Popular Question to Hans-Ulrich Klein ▴ 330