Bioconductor Genomeintervals

Showing : genomeintervals • reset

votes

replies

517

views

genomeIntervals GenomicRanges

13 months ago gshweta95 • 0

votes

replies

1.8k

views

granges bed genomicranges genomeintervals deseq2

7.3 years ago rbronste ▴ 60

votes

1.9k

views

genomeintervals UTRs exons CDS GenomicRanges

updated 7.8 years ago by Michael Lawrence ★ 11k • written 7.8 years ago by rubi ▴ 110

votes

replies

1.6k

views

nclist genomeintervals

updated 9.3 years ago by Hervé Pagès 16k • written 9.3 years ago by Jurat Shahidin ▴ 80

votes

1.4k

views

genomeIntervals

updated 9.9 years ago by Nicolas Delhomme ▴ 320 • written 10.1 years ago by mhz • 0

vote

replies

2.0k

views

genomeintervals

updated 9.9 years ago by Nicolas Delhomme ▴ 320 • written 9.9 years ago by sjackman • 0

votes

2.8k

views

BSgenome hexbin BSgenome IRanges genomeIntervals GenomicRanges girafe Rsamtools HiTC HiTC

updated 12.2 years ago by Dan Tenenbaum ★ 8.2k • written 12.2 years ago by Wim Kreinen ▴ 100

votes

replies

1.1k

views

Annotation convert genomeIntervals Annotation convert genomeIntervals

13.2 years ago delhomme@embl.de ★ 1.2k

votes

1.1k

views

genomeIntervals genomeIntervals

updated 14.1 years ago by Hervé Pagès 16k • written 14.1 years ago by Julien Gagneur ▴ 50

votes

replies

1.3k

views

Sequencing Annotation GO rtracklayer IRanges genomeIntervals Sequencing Annotation GO

15.3 years ago Robert Castelo ★ 3.4k

10 results • Page 1 of 1

Recent ...

Replies

Answer: Error in readCodelinkSet function by James W. MacDonald 68k

Please don't cross-post to Biostars. Either post here or there, but not both.

Comment: What happened to the Joost2016 dataset by shepherl 4.1k

what package is this function from and what did it do when it was working?

Comment: limma correction for tumor purity by gabriella.jacobson-eisenberg ▴ 20

Here's why: I am not ONLY interested in doing differential expression analysis with my data. While that is one test that I am going to do u…

Answer: Best tximport quant.genes.sf by ATpoint ★ 4.8k

The tx in the name stands for transcript. Gene level needs no tximport. You could simply use the standard output from salmon and do what th…

Comment: EuroBioC2023 abstract submission is open! by arden • 0

Woohoo! Abstract submission for EuroBioC2023 is open! Time to dust off my research and get those submissions ready. Hope to see some awesom…

Votes

Comment: How to load scRNA-seq data from GEO

limma correction for tumor purity

Answer: limma correction for tumor purity

Awards • All

Popular Question to gabriella.jacobson-eisenberg ▴ 20

Popular Question to nazaninhoseinkhan • 0