Showing : genomeintervals • reset
0
votes
0
replies
846
views
Using Granges to find overlapping pairs at exactly 10kb distance
genomeIntervals GenomicRanges
23 months ago gshweta95 • 0
2
votes
3
replies
2.0k
views
GRanges object from gene list
granges bed genomicranges genomeintervals deseq2
8.1 years ago rbronste ▴ 60
2
votes
1
reply
2.1k
views
Extracting UTRs from exon and CDS data
genomeintervals UTRs exons CDS GenomicRanges
updated 8.6 years ago by ★ 11k • written 8.6 years ago by ▴ 110
3
votes
2
replies
1.8k
views
What is the main difference between nclist and intervaltree algorithm in GenomicRanges packages ?
nclist genomeintervals
updated 10.1 years ago by 16k • written 10.1 years ago by ▴ 80
0
votes
1
reply
1.6k
views
cannot load genomeIntervals package
genomeIntervals
updated 10.7 years ago by ▴ 320 • written 10.9 years ago by • 0
1
vote
8
replies
2.5k
views
Bug: readGff3 isRightOpen should be FALSE
genomeintervals
updated 10.7 years ago by ▴ 320 • written 10.7 years ago by • 0
0
votes
1
reply
3.0k
views
biocLite("TxDb.Hsapiens.UCSC.hg19.knownGene") fails
BSgenome hexbin BSgenome IRanges genomeIntervals GenomicRanges girafe Rsamtools HiTC HiTC
updated 13.0 years ago by ★ 8.2k • written 13.0 years ago by ▴ 100
0
votes
0
replies
1.2k
views
convert "Genome_intervals_stranded" to "Genome_intervals"? (girafe)
Annotation convert genomeIntervals Annotation convert genomeIntervals
14.0 years ago delhomme@embl.de ★ 1.2k
0
votes
1
reply
1.3k
views
gff files: how to tell if right-open interval convention used?
genomeIntervals genomeIntervals
updated 14.9 years ago by 16k • written 14.9 years ago by ▴ 50
0
votes
0
replies
1.4k
views
stranded findOverlaps
Sequencing Annotation GO rtracklayer IRanges genomeIntervals Sequencing Annotation GO
16.1 years ago Robert Castelo ★ 3.4k
10 results • Page 1 of 1
Recent ...
Replies
Comment: Question on processing compound protein groups in limpa by JKim • 0
Many thanks. I appreciate your advice.
Answer: Question on processing compound protein groups in limpa by Gordon Smyth 53k
Different people have different ways of dealing with compound protein groups. You could just leave them in the analysis, in which case limp…
Answer: Correct usage of limpa for protein input by Gordon Smyth 53k
limpa can work on protein-level quantifications, but they must be intensity-based and must be on the log scale. From what I read (<https://…
Comment: A problem occurs when running the monocle2 by a2a2hset32aa • 0
Troubleshooting monocle2 errors in R 4.5.1 often points to package incompatibilities, particularly with newer versions of igraph. For resea…
Comment: Deadline Extended: EuroBioC2026 Call for Abstracts by a2a2hset32aa • 0
Attending EuroBioC2026 is an excellent way for researchers to explore the intersection of technology and biology. For those seeking high qu…
Votes
Answer: Question on processing compound protein groups in limpa
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
A: Interpretaion of dendrogram height in WGCNA?
Awards • All
Popular Question to Dario Strbenac ★ 1.6k
Popular Question to chirag.parsania ▴ 10
Popular Question to Michael Love 43k
Popular Question to Dan Tenenbaum ★ 8.2k
Scholar to Gordon Smyth 53k
Locations • All
Melbourne, Australia, 17 minutes ago
United States, 34 minutes ago
United States, 36 minutes ago
United States, 42 minutes ago
WEHI, Melbourne, Australia, 55 minutes ago
Traffic: 1107 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6