Bioconductor Genomicfiles

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GenomicFiles BiocParallel

updated 6.9 years ago by shepherl 3.9k • written 7.0 years ago by m.van_iterson ▴ 20

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rsamtools genomicalignments genomicfiles

updated 8.8 years ago by Martin Morgan 25k • written 8.8 years ago by Welliton de Souza ▴ 70

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genomicfiles rsamtools

updated 7.9 years ago by Martin Morgan 25k • written 7.9 years ago by victoriaccorey ▴ 10

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1.3k

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rsamtools genomicalignments genomicfiles

updated 7.8 years ago by Hervé Pagès 16k • written 7.8 years ago by jfiksel ▴ 30

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GenomicFiles

updated 5.1 years ago by Martin Morgan 25k • written 5.1 years ago by Qiang ▴ 80

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genomicfiles reduceByRange

updated 6.7 years ago by Valerie Obenchain ★ 6.8k • written 6.7 years ago by maltethodberg ▴ 180

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980

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genomicfiles

updated 6.4 years ago by Martin Morgan 25k • written 6.4 years ago by Qiang ▴ 80

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GenomicInteractions Basic4Cseq DNASeq GenomicFiles

2.8 years ago koushik • 0

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987

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GO Biostrings rtracklayer GenomicRanges BiocParallel GenomicFiles

9.7 years ago Dan Tenenbaum ★ 8.2k

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GenomicFiles ShortRead Rsamtools

3.2 years ago robmaz77 ▴ 20

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Comment: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa by alex.pico ▴ 20

Hi Matthew. Happy to help. The error message you are getting is indeed not very helpful. It's just saying that the CyREST return obj "res" …

Comment: ChipQC 'names' attribute [9] must be the same length as the vector [2]' by bandconductor • 0

thanks! you have saved me so much time

Comment: Problem finding certain variables when importing a public database GSE73103 by Guido Hooiveld ★ 3.9k

FWIW: when I would like to make use of publicly available data, I always use the website to explore which metadata is submitted to GEO (and…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k

This is `blockLength=200000`, and providing `seg=seg`? It's alright that it's not identical. In the bootstrapped data, you will now have l…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

Thank you, Michael. I used the script shared by you. The genomic distribution of the original and null loci looks like non-stationary. Plea…

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Answer: ChipQC 'names' attribute [9] must be the same length as the vector [2]'

ChipQC 'names' attribute [9] must be the same length as the vector [2]'

A: DEXSeq time course design

using variable in design formula

differential expression for Single-cell RNAseq data using edgeR

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