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Showing :
getGEO
•
reset
4
votes
8
replies
6.9k
views
getGEO - cannot Open URL issue
getGEO
R
GEOquery
8.6 years ago
alptaciroglu
▴ 50
3
votes
11
replies
4.0k
views
GEOquery http:// url error
geoquery
error
getgeo
microarray
geo
updated 6.3 years ago by
Sean Davis
21k • written 7.1 years ago by
jblack29
• 0
0
votes
1
reply
3.6k
views
getGEO Failed to connect to ftp.ncbi.nlm.nih.gov port 21: Timed out
getGEO
8.2 years ago
maedakus
▴ 10
3
votes
2
replies
3.1k
views
getGEO error when trying to download a series matrix file
GEOquery
getGEO
6.1 years ago
rubi
▴ 110
2
votes
4
replies
2.8k
views
getGEO function not identifying local file
geoquery
getGEO
8.6 years ago
Prasanth
▴ 20
2
votes
2
replies
2.1k
views
GEOquery error in downloading SOFT files
geoquery
getgeo
GEO
7.4 years ago
hzc363
▴ 20
0
votes
2
replies
2.0k
views
Why getGEO returns an expressionset with zero features ?
getgeo
8.1 years ago
xishan78
• 0
2
votes
2
replies
1.8k
views
getGEO error
getgeo
geoquery
updated 8.3 years ago by
Gordon Smyth
50k • written 8.3 years ago by
maedakus
▴ 10
0
votes
2
replies
1.7k
views
Error in GEOquery
geoquery
getgeo
R
updated 7.1 years ago by
James W. MacDonald
65k • written 7.1 years ago by
rk489
• 0
2
votes
2
replies
1.6k
views
Problem with GEOquery R package in Windows when trying to download specific GEO processed data
geoquery
affymetrix microarrays
windows8
getGEO
updated 7.1 years ago by
Sean Davis
21k • written 7.1 years ago by
svlachavas
▴ 830
2
votes
4
replies
1.6k
views
GEOquery: Shifted data columns in phenotype data
geoquery
getgeo
8.3 years ago
rfb
• 0
2
votes
6
replies
1.5k
views
error reading GSE using getGEO()
r
geo
getgeo
5.8 years ago
jaleh.amo
• 0
3
votes
4
replies
1.3k
views
getGEO Error: Duplicate identifiers for rows
geoquery
getgeo
updated 6.2 years ago by
Sean Davis
21k • written 6.2 years ago by
umahajan
▴ 10
2
votes
2
replies
1.2k
views
getGEO from GEOquery doesn't return probesets
geoquery
getgeo
probeset
updated 6.1 years ago by
James W. MacDonald
65k • written 6.1 years ago by
dnedveck
• 0
3
votes
1
reply
1.2k
views
getGEO Error: Duplicate identifiers for rows
getGEO
updated 6.4 years ago by
James W. MacDonald
65k • written 6.4 years ago by
cg
▴ 10
0
votes
0
replies
953
views
getGEO is taking too long time for a file that is already locally cached
getgeo
r
8.2 years ago
alptaciroglu
▴ 50
16 results • Page
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Answer: More regions in union when increasing DBA$config$mergeOverlap
by
Rory Stark
★ 5.2k
I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…
Comment: log2FoldChange value is way too different when compared with counts(dds)
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HAK
• 0
Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…
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ATpoint
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Here the error probably means that you habe genes where expression scross all samples is the same. Rowscaling is value minus mean divided b…
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James W. MacDonald
65k
Here's a self contained reproducible example, using part of the example in `?matchPWM` ``` > library(Biostrings) > data(HNF4alpha) > libr…
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