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ggplot
•
reset
2
votes
3
replies
2.8k
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Plot PCA with ellipses using ggplot
DESeq2
ggplot
PCA
written 13 months ago by
robledoj13
• 0
0
votes
2
replies
1.3k
views
ggplot and geom_lines for clustering
ggplot
updated 2.4 years ago by
Konstantinos Yeles
▴ 90 • written 2.4 years ago by
R_diot
• 0
0
votes
0
replies
888
views
Using a clustree object to draw a "classical" dendogram
ggplot
dendogram
ggtreeExtra
clustree
ggtree
2.4 years ago
christian.dina
• 0
0
votes
0
replies
940
views
TCseq plot
TCseq
ggplot
3.2 years ago
jochen
• 0
0
votes
0
replies
2.9k
views
How to solve Error in ggplot could not find function "+<-"?
ggplot
3.7 years ago
nattzy94
▴ 20
1
vote
1
reply
926
views
problem regarding bioconducter package installation
ggplot
updated 4.3 years ago by
Kevin Blighe
★ 4.0k • written 4.3 years ago by
abhisek001
• 0
0
votes
0
replies
965
views
How to plot "chromosomewise" "allele frequency" of a "Hybrid" in comparison to its "Inbred parents"
ggplot2
ggplot
cmplot
6.4 years ago
gens8094
• 0
0
votes
0
replies
950
views
How to plot "chromosomewise" "allele frequency" of a "Hybrid" in comparison to its "Inbred parents"
ggplot
cmplot
ggplot2
6.5 years ago
gens8094
• 0
0
votes
1
reply
24k
views
Error in .External.graphics(C_layout, num.rows, num.cols, mat, as.integer(num.figures)
edger
ggplot
updated 7.9 years ago by
Aaron Lun
★ 29k • written 7.9 years ago by
mictadlo
▴ 10
2
votes
1
reply
2.3k
views
Error in plot.new() : figure margins too large
edger
ggplot
updated 7.9 years ago by
Gordon Smyth
52k • written 7.9 years ago by
mictadlo
▴ 10
1
vote
1
reply
1.8k
views
ggplot same data, different plots
ggplot2
ggplot
plot
updated 9.6 years ago by
James W. MacDonald
68k • written 9.6 years ago by
alptaciroglu
▴ 50
11 results • Page
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Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
by
snijesh
▴ 200
I would like to clarify whether the command `res <- results(dds, name = "phaseLP.conditionTreated")` is the correct approach to generate …
Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
by
James W. MacDonald
68k
Not sure I understand. You ask how to do something and then show how one would do so.
Comment: DiffBind getting Fold values of near 0
by
littlefishes20
▴ 10
Same issues. All peaks return to a fold near 0, although they are significant when visualizing in IGV. Please find the MAplot and volcanoPl…
Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
by
snijesh
▴ 200
I have checked DEGs between Solvent Control (SC) of FP and LP and there are noticebale differences in terms of DEGs. ``` # Checking SC in …
Answer: A0A287BB68 not recognized as UNPROT key in org.Ss.eg.db using AnnotationDbi::sel
by
James W. MacDonald
68k
Apparently it's been over-ridden by a different UniProtKB ID ``` > select(org.Ss.eg.db, "MYH11", "UNIPROT", "SYMBOL") 'select()' retu…
Votes
How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
Can NanoString data be analyzed using DESeq2?
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