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ggplot
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reset
2
votes
3
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3.0k
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Plot PCA with ellipses using ggplot
DESeq2
ggplot
PCA
written 16 months ago by
robledoj13
• 0
0
votes
2
replies
1.4k
views
ggplot and geom_lines for clustering
ggplot
updated 2.7 years ago by
Konstantinos Yeles
▴ 90 • written 2.7 years ago by
R_diot
• 0
0
votes
0
replies
950
views
Using a clustree object to draw a "classical" dendogram
ggplot
dendogram
ggtreeExtra
clustree
ggtree
2.7 years ago
christian.dina
• 0
0
votes
0
replies
993
views
TCseq plot
TCseq
ggplot
3.5 years ago
jochen
• 0
0
votes
0
replies
3.0k
views
How to solve Error in ggplot could not find function "+<-"?
ggplot
4.0 years ago
nattzy94
▴ 20
1
vote
1
reply
968
views
problem regarding bioconducter package installation
ggplot
updated 4.6 years ago by
Kevin Blighe
★ 4.0k • written 4.6 years ago by
abhisek001
• 0
0
votes
0
replies
1.0k
views
How to plot "chromosomewise" "allele frequency" of a "Hybrid" in comparison to its "Inbred parents"
ggplot2
ggplot
cmplot
6.7 years ago
gens8094
• 0
0
votes
0
replies
993
views
How to plot "chromosomewise" "allele frequency" of a "Hybrid" in comparison to its "Inbred parents"
ggplot
cmplot
ggplot2
6.7 years ago
gens8094
• 0
0
votes
1
reply
24k
views
Error in .External.graphics(C_layout, num.rows, num.cols, mat, as.integer(num.figures)
edger
ggplot
updated 8.2 years ago by
Aaron Lun
★ 29k • written 8.2 years ago by
mictadlo
▴ 10
2
votes
1
reply
2.3k
views
Error in plot.new() : figure margins too large
edger
ggplot
updated 8.2 years ago by
Gordon Smyth
53k • written 8.2 years ago by
mictadlo
▴ 10
1
vote
1
reply
1.9k
views
ggplot same data, different plots
ggplot2
ggplot
plot
updated 9.9 years ago by
James W. MacDonald
68k • written 9.9 years ago by
alptaciroglu
▴ 50
11 results • Page
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Comment: DECIPHER DesignProbes unable to design FISH-probes
by
Erik Wright
▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
Michael Love
43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment
by
Michael Love
43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Answer: PTM analysis in LIMPA
by
Gordon Smyth
53k
For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…
Answer: problem reading bam files into nucleR
by
James W. MacDonald
68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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