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ggplot
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reset
2
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3
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3.1k
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Plot PCA with ellipses using ggplot
DESeq2
ggplot
PCA
written 17 months ago by
robledoj13
• 0
0
votes
2
replies
1.4k
views
ggplot and geom_lines for clustering
ggplot
updated 2.8 years ago by
Konstantinos Yeles
▴ 90 • written 2.8 years ago by
R_diot
• 0
0
votes
0
replies
1.0k
views
Using a clustree object to draw a "classical" dendogram
ggplot
dendogram
ggtreeExtra
clustree
ggtree
2.8 years ago
christian.dina
• 0
0
votes
0
replies
1.0k
views
TCseq plot
TCseq
ggplot
3.6 years ago
jochen
• 0
0
votes
0
replies
3.1k
views
How to solve Error in ggplot could not find function "+<-"?
ggplot
4.1 years ago
nattzy94
▴ 20
1
vote
1
reply
983
views
problem regarding bioconducter package installation
ggplot
updated 4.7 years ago by
Kevin Blighe
★ 4.0k • written 4.7 years ago by
abhisek001
• 0
0
votes
0
replies
1.0k
views
How to plot "chromosomewise" "allele frequency" of a "Hybrid" in comparison to its "Inbred parents"
ggplot2
ggplot
cmplot
6.8 years ago
gens8094
• 0
0
votes
0
replies
1.0k
views
How to plot "chromosomewise" "allele frequency" of a "Hybrid" in comparison to its "Inbred parents"
ggplot
cmplot
ggplot2
6.8 years ago
gens8094
• 0
0
votes
1
reply
24k
views
Error in .External.graphics(C_layout, num.rows, num.cols, mat, as.integer(num.figures)
edger
ggplot
updated 8.3 years ago by
Aaron Lun
★ 29k • written 8.3 years ago by
mictadlo
▴ 10
2
votes
1
reply
2.3k
views
Error in plot.new() : figure margins too large
edger
ggplot
updated 8.3 years ago by
Gordon Smyth
53k • written 8.3 years ago by
mictadlo
▴ 10
1
vote
1
reply
1.9k
views
ggplot same data, different plots
ggplot2
ggplot
plot
updated 10.0 years ago by
James W. MacDonald
68k • written 10.0 years ago by
alptaciroglu
▴ 50
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Answer: Confounded design, batch effect correction (edgeR)
by
nig.httopss
• 0
To perform gene matching accurately, you should use the formula ~0 + Group + Batch in the design matrix to better manage sample groups. Sin…
Comment: Clarification on counting in Rsubread (featureCounts)
by
Gordon Smyth
53k
Have you told featureCounts to do strand-specific counting? As pointed out by Frances Turner, you can lose reads if they overlap the gene …
Answer: Clarification on counting in Rsubread (featureCounts)
by
Frances Turner
▴ 10
You should look at the summary files produced by feature counts. This gives a breakdown of what happened to reads that were not assigned. Y…
Comment: Incosistencies in buildSNNGraph() function
by
ATpoint
★ 5.0k
Just played with this a bit and I think it comes down to not having a fixed seed before running the leiden thingy. Same goes for PCA and UM…
Answer: Incosistencies in buildSNNGraph() function
by
Aaron Lun
★ 29k
The most obvious thing that comes to mind is the RNG seed. `cluster_leiden()` does some random number generation, somewhere deep in the **i…
Votes
Answer: Clarification on counting in Rsubread (featureCounts)
C: RNA-Seq analysis with Limma/edgeR, time course experiment, aberrant results
C: RNA-Seq analysis with Limma/edgeR, time course experiment, aberrant results
A: Conversion from counts to FPKM
Answer: Incosistencies in buildSNNGraph() function
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