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Showing :
glad
•
reset
1
vote
1
reply
2.0k
views
multiple threads on QuasR
Alignment
GLAD
QuasR
Alignment
GLAD
QuasR
11.1 years ago • updated 11.0 years ago
Michael Stadler
▴ 350
0
votes
0
replies
1.1k
views
browseGenome width question (rtracklayer)
Epigenetics
GO
hgu95av2
GLAD
rtracklayer
Epigenetics
GO
hgu95av2
GLAD
rtracklayer
15.3 years ago
Michael Lawrence
▴ 620
0
votes
1
reply
1.1k
views
Normalized data in expresso and Expression Console differ
Normalization
GLAD
Normalization
GLAD
updated 14.9 years ago by
cstrato
★ 3.9k • written 14.9 years ago by
Oliver Stolpe
▴ 10
0
votes
0
replies
1.2k
views
error in plotKEGGGraph
Pathways
GLAD
KEGGgraph
Pathways
GLAD
KEGGgraph
13.6 years ago
Robert M. Flight
▴ 280
0
votes
0
replies
877
views
HTqPCR question
Microarray
limma
GLAD
HTqPCR
Microarray
limma
GLAD
HTqPCR
13.5 years ago
Heidi Dvinge
★ 2.0k
0
votes
0
replies
1.1k
views
question regarding ChIPPeakAnno use
Annotation
annotate
GLAD
ChIPpeakAnno
Annotation
annotate
GLAD
ChIPpeakAnno
11.7 years ago
Julie Zhu
★ 4.3k
0
votes
3
replies
2.0k
views
Diffbind: Binding Affinity Heatmap
Sequencing
GO
Clustering
GLAD
edgeR
DESeq
DiffBind
Sequencing
GO
Clustering
GLAD
edgeR
10.7 years ago
Rory Stark
★ 5.2k
0
votes
1
reply
984
views
Re: Bioconductor digest, Vol 1 #134 - 5 msgs
cdf
multtest
affy
GLAD
cdf
multtest
affy
GLAD
updated 21.6 years ago by
Laurent Gautier
★ 2.3k • written 21.6 years ago by
Larry
▴ 10
0
votes
2
replies
881
views
Re: Better mailing list archives {was "Searching BioC .."}
GLAD
GLAD
20.6 years ago
Warnes, Gregory R
▴ 460
0
votes
0
replies
947
views
affy, how to define the normalization method that works with my data
Normalization
affy
GLAD
Normalization
affy
GLAD
19.8 years ago
Dipl.-Ing. Johannes Rainer
▴ 430
0
votes
1
reply
601
views
questions about limma
Microarray
limma
GLAD
Microarray
limma
GLAD
updated 19.8 years ago by
James W. MacDonald
65k • written 19.8 years ago by
κ¸Õ£¨±±¾©-¶¯Ì¬»ù
▴ 10
0
votes
0
replies
611
views
GeneExpressionOmnibus (GEO) question
AnnBuilder
GLAD
AnnBuilder
GLAD
19.5 years ago
Ilya Venger
▴ 20
0
votes
0
replies
1.3k
views
Metrology for Gene Expression -- Postdoc Opportunities at NIST
Microarray
PROcess
GLAD
attract
Microarray
PROcess
GLAD
attract
19.4 years ago
Marc Salit
▴ 80
0
votes
8
replies
1.5k
views
Gene Selection
GLAD
GLAD
updated 19.3 years ago by
Arne.Muller@sanofi-aventis.com
▴ 210 • written 19.3 years ago by
Heike Pospisil
▴ 310
0
votes
0
replies
1.1k
views
Detecting overrepresented genomic loci
aCGH
Clustering
CGH
geneplotter
DNAcopy
aCGH
GLAD
aCGH
Clustering
CGH
geneplotter
aCGH
19.1 years ago
Yi, Andrew
▴ 20
0
votes
1
reply
795
views
error message from GLAD
CGH
GLAD
CGH
GLAD
updated 18.7 years ago by
Philippe Hupé
▴ 20 • written 18.7 years ago by
Irene Li
▴ 30
0
votes
0
replies
658
views
Rosetta vs Limma
limma
GLAD
limma
GLAD
18.5 years ago
Gordon Smyth
50k
0
votes
0
replies
607
views
geneName in GEOquery package
affy
GLAD
GEOquery
affy
GLAD
GEOquery
18.3 years ago
Sean Davis
21k
0
votes
0
replies
1.1k
views
Analysing categorical CGH data
Clustering
Cancer
CGH
GLAD
made4
Clustering
Cancer
CGH
GLAD
made4
17.7 years ago
Aedin Culhane
▴ 510
0
votes
0
replies
649
views
fedora core 5 x86_64 rpm extras
GLAD
GLAD
17.6 years ago
D.Enrique ESCOBAR ESPINOZA
▴ 360
0
votes
1
reply
1.1k
views
Help with GenePix files
Normalization
marray
GLAD
Normalization
marray
GLAD
updated 17.2 years ago by
Seth Falcon
★ 7.4k • written 17.2 years ago by
Heike Pospisil
▴ 310
0
votes
0
replies
955
views
FDR of enrichment analysis and other questions on GOstats
Cancer
GOstats
GLAD
Cancer
GOstats
GLAD
16.8 years ago
Serge Eifes
▴ 90
0
votes
0
replies
784
views
how to get fewer cut points with DNAcopy or GLAD
SNP
affy
DNAcopy
GLAD
SNP
affy
DNAcopy
GLAD
16.8 years ago
Wittner, Ben
▴ 290
0
votes
7
replies
1.8k
views
segmentation for Affy SNP arrays
SNP
CGH
affy
GLAD
snapCGH
SNP
CGH
affy
GLAD
snapCGH
updated 16.6 years ago by
Rob Scharpf
▴ 250 • written 16.6 years ago by
Yu Chuan Tai
▴ 440
0
votes
2
replies
1.2k
views
Chromosome 23 and 24 dropped after run snapCGH processCGH
aCGH
Survival
Cancer
annotate
genefilter
affy
DNAcopy
aCGH
GLAD
tilingArray
snapCGH
updated 16.6 years ago by
J-C. Marioni
▴ 40 • written 16.6 years ago by
caiwei@mdanderson.org
▴ 110
0
votes
4
replies
1.4k
views
running time of snapCGH processCGH and runDNAcopy
aCGH
Survival
CGH
annotate
genefilter
affy
DNAcopy
aCGH
GLAD
tilingArray
snapCGH
aCGH
updated 16.6 years ago by
jhs1jjm@leeds.ac.uk
▴ 230 • written 16.6 years ago by
caiwei@mdanderson.org
▴ 110
0
votes
2
replies
1.1k
views
hyperGTest and HyperGParams
Microarray
Annotation
GLAD
Category
Microarray
Annotation
GLAD
Category
updated 16.5 years ago by
rgentleman
★ 5.5k • written 16.5 years ago by
João Fadista
▴ 500
0
votes
1
reply
1.1k
views
Help needed with aroma.affymetrix package to extract copy-numbers
Normalization
cdf
GLAD
Normalization
cdf
GLAD
updated 16.2 years ago by
Henrik Bengtsson
★ 2.4k • written 16.2 years ago by
Christian.Stratowa@vie.boehringer-ingel…
▴ 270
0
votes
0
replies
1.5k
views
Cutoff to use for IQR filtering in genefilter
genefilter
affy
limma
GeneSpring
affylmGUI
GLAD
SIM
genefilter
affy
limma
GeneSpring
15.9 years ago
Mark Cowley
▴ 400
0
votes
0
replies
700
views
REPRESENTATIVES NEEDED @ STEELBEL.BE
GLAD
GLAD
15.8 years ago
R.HIMPE
▴ 10
0
votes
2
replies
1.3k
views
Adding a text label to the classvec colour bar in heatplot
Clustering
Cancer
graph
GLAD
Clustering
Cancer
graph
GLAD
updated 15.8 years ago by
Amy Mikhail
▴ 460 • written 15.8 years ago by
Kasper Daniel Hansen
★ 6.5k
0
votes
1
reply
907
views
limma background correction
limma
GLAD
limma
GLAD
updated 15.7 years ago by
Gordon Smyth
50k • written 15.7 years ago by
Artur Veloso
▴ 340
0
votes
4
replies
1.3k
views
Problem in reading JPEG files for CGH arrays
aCGH
Genetics
aCGH
GLAD
aCGH
Genetics
aCGH
GLAD
updated 15.3 years ago by
Sean Davis
21k • written 15.3 years ago by
Alberto Goldoni
▴ 360
0
votes
2
replies
1.3k
views
Problem with Annotation of Mouse4302.db in simpleaffy
Annotation
mouse4302
simpleaffy
GLAD
Annotation
mouse4302
simpleaffy
GLAD
updated 15.3 years ago by
James W. MacDonald
65k • written 15.3 years ago by
Marietta Herrmann
▴ 40
0
votes
4
replies
3.1k
views
retrieving mRNA sequences via biomaRt
GLAD
biomaRt
GLAD
biomaRt
updated 14.8 years ago by
Wolfgang Huber
★ 13k • written 14.8 years ago by
Simon
▴ 30
0
votes
0
replies
5.1k
views
Reading GFF files into R and GenomeGraphs
Coverage
Annotation
Visualization
convert
GLAD
GenomeGraphs
rtracklayer
IRanges
Coverage
14.7 years ago
Michael Dondrup
▴ 140
0
votes
0
replies
1.0k
views
general CGH threshold question
aCGH
CGH
aCGH
GLAD
snapCGH
aCGH
CGH
aCGH
GLAD
snapCGH
14.7 years ago
Wolfgang RAFFELSBERGER
▴ 140
0
votes
7
replies
1.4k
views
problem to compute copy number with crlmm
GLAD
crlmm
GLAD
crlmm
updated 14.5 years ago by
Rob Scharpf
▴ 250 • written 14.5 years ago by
Sören Gröttrup
▴ 40
0
votes
13
replies
1.7k
views
problem with data processing in R
PROcess
GLAD
PROcess
GLAD
updated 14.4 years ago by
Thomas Girke
★ 1.7k • written 14.4 years ago by
Maxim
▴ 170
0
votes
4
replies
1.5k
views
Positive correlation between dye-swap technical replicates
Normalization
Clustering
probe
limma
GLAD
Normalization
Clustering
probe
limma
GLAD
14.3 years ago
Michał Góralski
▴ 40
0
votes
4
replies
1.1k
views
Discrepancy on results from gcrma function and justGCRMA
gcrma
GLAD
gcrma
GLAD
updated 14.3 years ago by
James W. MacDonald
65k • written 14.3 years ago by
Jenny Drnevich
★ 2.0k
0
votes
1
reply
1.6k
views
Design matrix for time course analysis with maSigPro
GLAD
maSigPro
GLAD
maSigPro
updated 13.9 years ago by
Wolfgang Huber
★ 13k • written 14.0 years ago by
Matthias Boeck
▴ 10
0
votes
1
reply
1.3k
views
write.XStringView/write.XStringSet highly inefficient (solved)
Cancer
BSgenome
PROcess
GLAD
BSgenome
Cancer
BSgenome
PROcess
GLAD
BSgenome
updated 13.8 years ago by
Steve Lianoglou
★ 13k • written 13.8 years ago by
Michael Dondrup
▴ 550
0
votes
2
replies
2.2k
views
problem installing 'GLAD' package
cdf
GLAD
cdf
GLAD
13.4 years ago
Shenglin Zheng
▴ 20
0
votes
1
reply
1.4k
views
[Rocky] - Clarification for finding SNPs at 3'UTR, 5'UTR, CDS genomic regions
SNP
Cancer
GLAD
SNP
Cancer
GLAD
updated 13.3 years ago by
Hervé Pagès
16k • written 13.3 years ago by
하오잠 로
▴ 30
0
votes
1
reply
846
views
Newbie question
GLAD
GLAD
updated 13.3 years ago by
James W. MacDonald
65k • written 13.3 years ago by
quantrum75
▴ 30
0
votes
1
reply
1.3k
views
edgeR glm fit error
GO
GLAD
edgeR
GO
GLAD
edgeR
13.2 years ago
Gordon Smyth
50k
0
votes
1
reply
1.3k
views
how to do paired t-tests for multiple subgroups [was: warnings or potential problems in limma procedure]
Cancer
limma
GLAD
Category
Cancer
limma
GLAD
Category
updated 13.1 years ago by
Yi, Ming NIH/NCI [C]
▴ 100 • written 13.1 years ago by
Gordon Smyth
50k
0
votes
1
reply
879
views
Rgraphviz windows version incompatible with current Graphviz
Rgraphviz
PROcess
GLAD
Rgraphviz
PROcess
GLAD
updated 13.0 years ago by
Martin Morgan
25k • written 13.0 years ago by
Gregory D.Rodd
▴ 10
0
votes
2
replies
842
views
Help with the weaver example from limma package
Annotation
GLAD
Annotation
GLAD
updated 12.9 years ago by
Gordon Smyth
50k • written 12.9 years ago by
Marcus Nunes
▴ 20
50 results • Page
1 of 1
Recent ...
Replies
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Chris
• 0
Intent to delete when going home. Sorry for that!
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Gordon Smyth
50k
Please ask you own question. Inserting your own dataset into someone else's question like this is very impolite. I have already answered m…
Comment: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
limma most certainly is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of …
Comment: package goseq seems to be not available on the latest version of R
by
Patrycja
▴ 20
limma package also isn't available.Is there any information when these packages will be available?
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Chris
• 0
Thanks Gordon for the advice!
Votes
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Handling multiple differential expression comparisons
Answer: fgsea significant result
Answer: fgsea significant result
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