Bioconductor GlmLRT()

Showing : glmLRT() • reset

votes

replies

1.8k

views

edger design matrix glmlrt() glmQFTest() paired design

7.1 years ago oakhamwolf • 0

votes

replies

2.7k

views

EdgeR glmlrt() ql f-test

9.1 years ago • updated 8.4 years ago elineverbon ▴ 20

votes

replies

4.4k

views

edger contrast covariate glmlrt()

8.7 years ago Jeff Skinner • 0

vote

replies

1.7k

views

edger differential gene expression glmlrt()

9.0 years ago simarsidhu25 • 0

votes

replies

3.5k

views

edger differential gene expression glmlrt()

9.0 years ago simarsidhu25 • 0

votes

replies

4.4k

views

edger glmfit glmlrt()

updated 10.1 years ago by Aaron Lun ★ 29k • written 10.1 years ago by cadeans • 0

votes

replies

2.5k

views

edger glmlrt() differential expression design and contrast matrix

updated 10.5 years ago by Gordon Smyth 53k • written 10.5 years ago by carlgdeboer • 0

votes

replies

4.7k

views

edger rnaseq glmlrt()

updated 10.7 years ago by James W. MacDonald 68k • written 10.7 years ago by MBWatson • 0

votes

replies

8.0k

views

edgeR glmLRT() multiple factor design multiple testing correction

updated 10.9 years ago by Aaron Lun ★ 29k • written 10.9 years ago by Ekarl2 ▴ 80

9 results • Page 1 of 1

Recent ...

Replies

Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k

The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…

Answer: PTM analysis in LIMPA by Gordon Smyth 53k

For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…

Answer: problem reading bam files into nucleR by James W. MacDonald 68k

The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…

Votes

C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

Awards • All

Commentator to sina.nassiri ▴ 130