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glmLRT()
•
reset
2
votes
2
replies
1.7k
views
EdgeR User Guide: use of glmLRT vs glmQLF in oral carcinoma Case Study
edger
design matrix
glmlrt()
glmQFTest()
paired design
6.9 years ago
oakhamwolf
• 0
4
votes
15
replies
2.6k
views
Adjusting for procedural effect and deciding on statistical test
EdgeR
glmlrt()
ql f-test
8.9 years ago • updated 8.2 years ago
elineverbon
▴ 20
0
votes
7
replies
4.3k
views
Computing contrasts with a covariate using edgeR glmLRT()
edger
contrast
covariate
glmlrt()
8.4 years ago
Jeff Skinner
• 0
1
vote
6
replies
1.6k
views
design of edgeR GLM test
edger
differential gene expression
glmlrt()
8.8 years ago
simarsidhu25
• 0
4
votes
7
replies
3.5k
views
Can we use glmQLFit instead of glmFit and then glmLRT in edgeR
edger
differential gene expression
glmlrt()
8.8 years ago
simarsidhu25
• 0
7
votes
5
replies
4.3k
views
edgeR effects of design on testing main effects and interactions
edger
glmfit
glmlrt()
updated 9.9 years ago by
Aaron Lun
★ 29k • written 9.9 years ago by
cadeans
• 0
4
votes
8
replies
2.3k
views
EdgeR: batches and samples over-specify system, how to contrast un-modeled variables?
edger
glmlrt()
differential expression
design and contrast matrix
updated 10.3 years ago by
Gordon Smyth
53k • written 10.3 years ago by
carlgdeboer
• 0
5
votes
7
replies
4.6k
views
How to specify 'contrast' in glmLRT command when treatments in design matrix are named with numbers, not letters
edger
rnaseq
glmlrt()
updated 10.5 years ago by
James W. MacDonald
68k • written 10.5 years ago by
MBWatson
• 0
6
votes
7
replies
7.8k
views
EdgeR: glmLRT(), Multifactorial designs and correction for multiple testing
edgeR
glmLRT()
multiple factor design
multiple testing correction
updated 10.7 years ago by
Aaron Lun
★ 29k • written 10.7 years ago by
Ekarl2
▴ 80
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Comment: DiffBind - question on the use of filtered or unfiltered input data
by
deltaexecutor4
• 0
FFH4X is a [Free Fire mod][1] menu APK that offers cheats like auto headshot, aimbot, ESP, wallhack, and unlimited skins. Players use it to…
Comment: GO.db and others package Download failure
by
James W. MacDonald
68k
Also, you never need to use anything but `BiocManager::install` to install any package, which has the beneficial side effect of ensuring th…
Comment: GO.db and others package Download failure
by
James W. MacDonald
68k
Yes. Your packages have odd Y version numbers (where the version is X.Y.Z). That means they are devel packages (release versions have even …
Comment: GO.db and others package Download failure
by
Skyler
• 0
Am I using Bioc-devel?
Comment: GO.db and others package Download failure
by
James W. MacDonald
68k
Is there a reason to use Bioc-devel? If not, you should be using the release version (which I am, and which installs `GO.db` without compla…
Votes
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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