Bioconductor GlmLRT()

Showing : glmLRT() • reset

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1.5k

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edger design matrix glmlrt() glmQFTest() paired design

6.1 years ago oakhamwolf • 0

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2.1k

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EdgeR glmlrt() ql f-test

8.1 years ago • updated 7.4 years ago elineverbon ▴ 20

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3.9k

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edger contrast covariate glmlrt()

7.6 years ago Jeff Skinner • 0

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edger differential gene expression glmlrt()

7.9 years ago simarsidhu25 • 0

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edger differential gene expression glmlrt()

8.0 years ago simarsidhu25 • 0

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3.9k

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edger glmfit glmlrt()

updated 9.0 years ago by Aaron Lun ★ 28k • written 9.0 years ago by cadeans • 0

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edger glmlrt() differential expression design and contrast matrix

updated 9.4 years ago by Gordon Smyth 51k • written 9.4 years ago by carlgdeboer • 0

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edger rnaseq glmlrt()

updated 9.7 years ago by James W. MacDonald 67k • written 9.7 years ago by MBWatson • 0

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7.5k

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edgeR glmLRT() multiple factor design multiple testing correction

updated 9.9 years ago by Aaron Lun ★ 28k • written 9.9 years ago by Ekarl2 ▴ 80

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Answer: Deseq2 res Function by Michael Love 43k

> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…

Answer: ANOVA like approach of edgeR by Gordon Smyth 51k

You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…

Answer: Create Illmina bead summary data by Gordon Smyth 51k

GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…

Comment: Help with RSEM counts: do I transpose matrix? by NB • 0

OK thank you.

Comment: Help with RSEM counts: do I transpose matrix? by James W. MacDonald 67k

You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.

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Answer: Deseq2 res Function

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification

Answer: ANOVA like approach of edgeR

Comment: ANOVA like approach of edgeR

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