Showing : glmLRT() • reset
2
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2
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EdgeR User Guide: use of glmLRT vs glmQLF in oral carcinoma Case Study
edger design matrix glmlrt() glmQFTest() paired design
6.9 years ago oakhamwolf • 0
4
votes
15
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2.6k
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Adjusting for procedural effect and deciding on statistical test
EdgeR glmlrt() ql f-test
8.9 years ago • updated 8.2 years ago elineverbon ▴ 20
0
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7
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4.3k
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Computing contrasts with a covariate using edgeR glmLRT()
edger contrast covariate glmlrt()
8.5 years ago Jeff Skinner • 0
1
vote
6
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1.6k
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design of edgeR GLM test
edger differential gene expression glmlrt()
8.8 years ago simarsidhu25 • 0
4
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7
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3.5k
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Can we use glmQLFit instead of glmFit and then glmLRT in edgeR
edger differential gene expression glmlrt()
8.8 years ago simarsidhu25 • 0
7
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5
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4.3k
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edgeR effects of design on testing main effects and interactions
edger glmfit glmlrt()
updated 9.9 years ago by ★ 29k • written 9.9 years ago by • 0
4
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8
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2.4k
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EdgeR: batches and samples over-specify system, how to contrast un-modeled variables?
edger glmlrt() differential expression design and contrast matrix
updated 10.3 years ago by 53k • written 10.3 years ago by • 0
5
votes
7
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4.6k
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How to specify 'contrast' in glmLRT command when treatments in design matrix are named with numbers, not letters
edger rnaseq glmlrt()
updated 10.5 years ago by 68k • written 10.5 years ago by • 0
6
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7
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7.8k
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EdgeR: glmLRT(), Multifactorial designs and correction for multiple testing
edgeR glmLRT() multiple factor design multiple testing correction
updated 10.7 years ago by ★ 29k • written 10.7 years ago by ▴ 80
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Answer: Sharing a collection of datasets in ExperimentHub by shepherl 4.2k
107 packages would be a lot! It is certainly possible (and recommended) to implement one package that utilizes ExperimentHub for controlli…
Comment: GO.db and others package Download failure by James W. MacDonald 68k
Also, you never need to use anything but `BiocManager::install` to install any package, which has the beneficial side effect of ensuring th…
Comment: GO.db and others package Download failure by James W. MacDonald 68k
Yes. Your packages have odd Y version numbers (where the version is X.Y.Z). That means they are devel packages (release versions have even …
Comment: GO.db and others package Download failure by Skyler • 0
Am I using Bioc-devel?
Comment: GO.db and others package Download failure by James W. MacDonald 68k
Is there a reason to use Bioc-devel? If not, you should be using the release version (which I am, and which installs `GO.db` without compla…
Votes
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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