Bioconductor GlmLRT()

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1.5k

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edger design matrix glmlrt() glmQFTest() paired design

6.0 years ago oakhamwolf • 0

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2.1k

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EdgeR glmlrt() ql f-test

8.0 years ago • updated 7.3 years ago elineverbon ▴ 20

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3.9k

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edger contrast covariate glmlrt()

7.6 years ago Jeff Skinner • 0

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1.3k

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edger differential gene expression glmlrt()

7.9 years ago simarsidhu25 • 0

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3.1k

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edger differential gene expression glmlrt()

7.9 years ago simarsidhu25 • 0

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3.9k

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edger glmfit glmlrt()

updated 9.0 years ago by Aaron Lun ★ 28k • written 9.0 years ago by cadeans • 0

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2.1k

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edger glmlrt() differential expression design and contrast matrix

updated 9.4 years ago by Gordon Smyth 51k • written 9.4 years ago by carlgdeboer • 0

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edger rnaseq glmlrt()

updated 9.7 years ago by James W. MacDonald 67k • written 9.7 years ago by MBWatson • 0

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7.4k

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edgeR glmLRT() multiple factor design multiple testing correction

updated 9.8 years ago by Aaron Lun ★ 28k • written 9.8 years ago by Ekarl2 ▴ 80

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Answer: Is it possible to parallelise saveHDF5SummarizedExperiment by Hervé Pagès 16k

Hi Stefano, Unfortunately HDF5 doesn't support concurrent writing so parallelising is not an option. A few things that maybe could help: …

Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by James W. MacDonald 67k

It's a simple two-liner in [getsrc.sh][1] ``` awk -F'\t' 'BEGIN {OFS=FS} {if($3 != $11 && $11 != "-") $3 = $11; print $0}' gene_info > tmp…

Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by Guido Hooiveld ★ 4.1k

Thanks for changing this! Just to confirm I understood it correctly: the `Symbol` will (still) be used, and will be replaced by `Symbol fro…

Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by James W. MacDonald 67k

OK, there are 157 MT genes in maybe 6 species for which the symbols are not correct, and I added code to swap the 'Symbol from nomenclature…

Comment: Tximport with RSEM error by Michael Love 42k

Would you post a new issue with example code and maybe what the files look like?

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Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db?

Answer: Supercells with Basilisk fails for dtype('float64') to dtype('int64') conversion

A: GOseq analysis with only upregulated or downregulated genes

Answer: Properly constructing a hypergeometric test

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