Showing : glmLRT() • reset
2
votes
2
replies
1.8k
views
EdgeR User Guide: use of glmLRT vs glmQLF in oral carcinoma Case Study
edger design matrix glmlrt() glmQFTest() paired design
7.2 years ago oakhamwolf • 0
4
votes
15
replies
2.8k
views
Adjusting for procedural effect and deciding on statistical test
EdgeR glmlrt() ql f-test
9.2 years ago • updated 8.5 years ago elineverbon ▴ 20
0
votes
7
replies
4.4k
views
Computing contrasts with a covariate using edgeR glmLRT()
edger contrast covariate glmlrt()
8.8 years ago Jeff Skinner • 0
1
vote
6
replies
1.7k
views
design of edgeR GLM test
edger differential gene expression glmlrt()
9.1 years ago simarsidhu25 • 0
4
votes
7
replies
3.6k
views
Can we use glmQLFit instead of glmFit and then glmLRT in edgeR
edger differential gene expression glmlrt()
9.1 years ago simarsidhu25 • 0
7
votes
5
replies
4.5k
views
edgeR effects of design on testing main effects and interactions
edger glmfit glmlrt()
updated 10.2 years ago by ★ 29k • written 10.2 years ago by • 0
4
votes
8
replies
2.5k
views
EdgeR: batches and samples over-specify system, how to contrast un-modeled variables?
edger glmlrt() differential expression design and contrast matrix
updated 10.6 years ago by 53k • written 10.6 years ago by • 0
5
votes
7
replies
4.8k
views
How to specify 'contrast' in glmLRT command when treatments in design matrix are named with numbers, not letters
edger rnaseq glmlrt()
updated 10.8 years ago by 68k • written 10.8 years ago by • 0
6
votes
7
replies
8.0k
views
EdgeR: glmLRT(), Multifactorial designs and correction for multiple testing
edgeR glmLRT() multiple factor design multiple testing correction
updated 11.0 years ago by ★ 29k • written 11.0 years ago by ▴ 80
9 results • Page 1 of 1
Recent ...
Replies
Comment: Development of MSstat workflow to analyze DIA time series data by Gordon Smyth 53k
Are there any other explanatory factors or covariates in your experiment other than time point? Do you have biological replicates at each t…
Answer: Question about the filterByExpr function inputs in edgeR by Gordon Smyth 53k
Either of these choices is perfectly acceptable from an edgeR analysis point of view, it is more to do with which is more relevant for your…
Comment: Clarification on counting in Rsubread (featureCounts) by Gordon Smyth 53k
Your follow-up question is very much wider than the first, and is essentially a research question rather a software question. As one of the…
Comment: Error in creating BSGenome package by Nguyen • 0
I keep running into this error, please help: ``` Writing all sequences to './BSgenome.Panubis.NCBI.Panubis1.0/inst/extdata/single_sequenc…
Comment: Joining different datasets and analyzing using the group-specific condition effe by James W. MacDonald 68k
There is an example of how you can do this in the [DESeq vignette][1]. An alternative would be to fit a linear mixed model using the `vari…
Votes
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Answer: Clarification on counting in Rsubread (featureCounts)
Comment: Clarification on counting in Rsubread (featureCounts)
C: ControlGenes/ housekeeping genes Deseq2
Answer: Clarification on counting in Rsubread (featureCounts)
Awards • All
Popular Question to mohammedtoufiq91 ▴ 10
Popular Question to Lluís Revilla Sancho ▴ 760
Commentator to James W. MacDonald 68k
Great Question to fl ▴ 20
Popular Question to Gordon Smyth 53k
Locations • All
The city by the bay, 29 minutes ago
WEHI, Melbourne, Australia, 59 minutes ago
Denmark, 1 hour ago
United States, 2 hours ago
Japan, 2 hours ago
Traffic: 980 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6