Showing : glmLRT() • reset
2
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EdgeR User Guide: use of glmLRT vs glmQLF in oral carcinoma Case Study
edger design matrix glmlrt() glmQFTest() paired design
7.1 years ago oakhamwolf • 0
4
votes
15
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2.8k
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Adjusting for procedural effect and deciding on statistical test
EdgeR glmlrt() ql f-test
9.1 years ago • updated 8.4 years ago elineverbon ▴ 20
0
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7
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4.4k
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Computing contrasts with a covariate using edgeR glmLRT()
edger contrast covariate glmlrt()
8.7 years ago Jeff Skinner • 0
1
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6
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1.7k
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design of edgeR GLM test
edger differential gene expression glmlrt()
9.0 years ago simarsidhu25 • 0
4
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7
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3.5k
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Can we use glmQLFit instead of glmFit and then glmLRT in edgeR
edger differential gene expression glmlrt()
9.0 years ago simarsidhu25 • 0
7
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5
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4.4k
views
edgeR effects of design on testing main effects and interactions
edger glmfit glmlrt()
updated 10.1 years ago by ★ 29k • written 10.1 years ago by • 0
4
votes
8
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2.5k
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EdgeR: batches and samples over-specify system, how to contrast un-modeled variables?
edger glmlrt() differential expression design and contrast matrix
updated 10.5 years ago by 53k • written 10.5 years ago by • 0
5
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7
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4.8k
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How to specify 'contrast' in glmLRT command when treatments in design matrix are named with numbers, not letters
edger rnaseq glmlrt()
updated 10.8 years ago by 68k • written 10.8 years ago by • 0
6
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7
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8.0k
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EdgeR: glmLRT(), Multifactorial designs and correction for multiple testing
edgeR glmLRT() multiple factor design multiple testing correction
updated 10.9 years ago by ★ 29k • written 10.9 years ago by ▴ 80
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Answer: segfault in edgeR glmQLFit by Gordon Smyth 53k
Dear Mark, Thank you for providing a reproducible example. I confirm that I can reproduce the segfault myself on my own computer. We will …
Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by aqeel • 0
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Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by Gordon Smyth 53k
I refered you to the DiffVar package 11 months ago. Did you consider it? Your clarification makes it clear that your issue is not with lim…
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by jtsy6383 • 0
Thanks for the reply Gordon. I am also working on the project and have been tasked to reformulate and add some details. We're interested i…
Answer: How does contrasts.fit do in limma to extract comparisons with a model having in by Gordon Smyth 53k
The limma Users Guide explains how to test for interactions or to test for contrasts very easily. limma can work with any design matrix, bu…
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Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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