Showing : glmLRT() • reset
2
votes
2
replies
1.8k
views
EdgeR User Guide: use of glmLRT vs glmQLF in oral carcinoma Case Study
edger design matrix glmlrt() glmQFTest() paired design
7.2 years ago oakhamwolf • 0
4
votes
15
replies
2.8k
views
Adjusting for procedural effect and deciding on statistical test
EdgeR glmlrt() ql f-test
9.2 years ago • updated 8.5 years ago elineverbon ▴ 20
0
votes
7
replies
4.4k
views
Computing contrasts with a covariate using edgeR glmLRT()
edger contrast covariate glmlrt()
8.8 years ago Jeff Skinner • 0
1
vote
6
replies
1.7k
views
design of edgeR GLM test
edger differential gene expression glmlrt()
9.1 years ago simarsidhu25 • 0
4
votes
7
replies
3.6k
views
Can we use glmQLFit instead of glmFit and then glmLRT in edgeR
edger differential gene expression glmlrt()
9.1 years ago simarsidhu25 • 0
7
votes
5
replies
4.5k
views
edgeR effects of design on testing main effects and interactions
edger glmfit glmlrt()
updated 10.2 years ago by ★ 29k • written 10.2 years ago by • 0
4
votes
8
replies
2.5k
views
EdgeR: batches and samples over-specify system, how to contrast un-modeled variables?
edger glmlrt() differential expression design and contrast matrix
updated 10.6 years ago by 53k • written 10.6 years ago by • 0
5
votes
7
replies
4.8k
views
How to specify 'contrast' in glmLRT command when treatments in design matrix are named with numbers, not letters
edger rnaseq glmlrt()
updated 10.8 years ago by 68k • written 10.8 years ago by • 0
6
votes
7
replies
8.0k
views
EdgeR: glmLRT(), Multifactorial designs and correction for multiple testing
edgeR glmLRT() multiple factor design multiple testing correction
updated 11.0 years ago by ★ 29k • written 11.0 years ago by ▴ 80
9 results • Page 1 of 1
Recent ...
Replies
Comment: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by ja569116 • 0
Hi @atpoint Thanks for the information. Could you please expand on when to use adjusted p-values vs nominal p-values. My understanding was …
Answer: limpa analysis advice by Gordon Smyth 53k
It is actually very hard to estimate the DPC from observed data, because the curve is function of unobserved intensities rather than a func…
Answer: When to use edgeR or limma by Gordon Smyth 53k
The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
I updated the above answer today.
Answer: When to use edgeR or limma by James W. MacDonald 68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Votes
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
Awards • All
Popular Question to Lluís Revilla Sancho ▴ 760
Popular Question to nromerov • 0
Popular Question to Thomas Girke ★ 1.7k
Teacher to Gordon Smyth 53k
Popular Question to Stephanie M. Gogarten ▴ 890
Locations • All
United States, 28 minutes ago
The city by the bay, 37 minutes ago
European Union, 2 hours ago
WEHI, Melbourne, Australia, 2 hours ago
United States, 4 hours ago
Traffic: 768 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6