Showing : glmLRT() • reset
2
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EdgeR User Guide: use of glmLRT vs glmQLF in oral carcinoma Case Study
edger design matrix glmlrt() glmQFTest() paired design
6.2 years ago oakhamwolf • 0
4
votes
15
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2.1k
views
Adjusting for procedural effect and deciding on statistical test
EdgeR glmlrt() ql f-test
8.2 years ago • updated 7.5 years ago elineverbon ▴ 20
0
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7
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4.0k
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Computing contrasts with a covariate using edgeR glmLRT()
edger contrast covariate glmlrt()
7.7 years ago Jeff Skinner • 0
1
vote
6
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1.3k
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design of edgeR GLM test
edger differential gene expression glmlrt()
8.0 years ago simarsidhu25 • 0
4
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7
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3.2k
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Can we use glmQLFit instead of glmFit and then glmLRT in edgeR
edger differential gene expression glmlrt()
8.0 years ago simarsidhu25 • 0
7
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5
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3.9k
views
edgeR effects of design on testing main effects and interactions
edger glmfit glmlrt()
updated 9.1 years ago by ★ 28k • written 9.1 years ago by • 0
4
votes
8
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2.1k
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EdgeR: batches and samples over-specify system, how to contrast un-modeled variables?
edger glmlrt() differential expression design and contrast matrix
updated 9.5 years ago by 52k • written 9.5 years ago by • 0
5
votes
7
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4.2k
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How to specify 'contrast' in glmLRT command when treatments in design matrix are named with numbers, not letters
edger rnaseq glmlrt()
updated 9.8 years ago by 67k • written 9.8 years ago by • 0
6
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7
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7.5k
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EdgeR: glmLRT(), Multifactorial designs and correction for multiple testing
edgeR glmLRT() multiple factor design multiple testing correction
updated 10.0 years ago by ★ 28k • written 10.0 years ago by ▴ 80
9 results • Page 1 of 1
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Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0
Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…
Answer: combining raw counts and estimated counts by O'Brien • 0
It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…
Comment: Packages don't update, but no error or warning is thrown by neighsanlo • 0
This is useful information.
Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by freemanmclaughlin9969289 • 0
Tools such as Pathway Analysis with Deweighting of Overlapping Genes ([block blast][1]) or Gene Set Enrichment Analysis for Single Cell RNA…
Comment: How to get around the warning message: mzR has been built against a different Rc by Nan • 0
Hello, I was wondering if you were able to resolve this issue? I've recently encountered a similar problem and would like to ask for your a…
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Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
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