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glmLRT()
•
reset
2
votes
2
replies
1.1k
views
EdgeR User Guide: use of glmLRT vs glmQLF in oral carcinoma Case Study
edger
design matrix
glmlrt()
glmQFTest()
paired design
4.9 years ago
oakhamwolf
• 0
4
votes
15
replies
1.5k
views
Adjusting for procedural effect and deciding on statistical test
EdgeR
glmlrt()
ql f-test
6.9 years ago • updated 6.2 years ago
elineverbon
▴ 20
0
votes
7
replies
3.3k
views
Computing contrasts with a covariate using edgeR glmLRT()
edger
contrast
covariate
glmlrt()
6.5 years ago
Jeff Skinner
• 0
1
vote
6
replies
983
views
design of edgeR GLM test
edger
differential gene expression
glmlrt()
6.8 years ago
simarsidhu25
• 0
4
votes
7
replies
2.5k
views
Can we use glmQLFit instead of glmFit and then glmLRT in edgeR
edger
differential gene expression
glmlrt()
6.8 years ago
simarsidhu25
• 0
7
votes
5
replies
3.2k
views
edgeR effects of design on testing main effects and interactions
edger
glmfit
glmlrt()
updated 7.9 years ago by
Aaron Lun
★ 28k • written 7.9 years ago by
cadeans
• 0
4
votes
8
replies
1.7k
views
EdgeR: batches and samples over-specify system, how to contrast un-modeled variables?
edger
glmlrt()
differential expression
design and contrast matrix
updated 8.3 years ago by
Gordon Smyth
48k • written 8.3 years ago by
carlgdeboer
• 0
5
votes
7
replies
3.3k
views
How to specify 'contrast' in glmLRT command when treatments in design matrix are named with numbers, not letters
edger
rnaseq
glmlrt()
updated 8.5 years ago by
James W. MacDonald
63k • written 8.5 years ago by
MBWatson
• 0
6
votes
7
replies
6.9k
views
EdgeR: glmLRT(), Multifactorial designs and correction for multiple testing
edgeR
glmLRT()
multiple factor design
multiple testing correction
updated 8.7 years ago by
Aaron Lun
★ 28k • written 8.7 years ago by
Ekarl2
▴ 80
9 results • Page
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Comment: DataFrame Construction With Non-standard Column
by
ATpoint
★ 3.4k
Out of interest, `SimpleList()` works without `I()`, why is that?
Answer: DataFrame Construction With Non-standard Column
by
Hervé Pagès
16k
You need to protect the list by wrapping it in `I()`, otherwise the `DataFrame()` constructor interprets it as a list of 3 columns (so it t…
Comment: Speeding up of DelayedArray::write_block()
by
Koki
▴ 10
Thank you, I have a very clear understanding of the situation. > COO_Sparse_HDF5RealizationSink(), writeHDF5SparseArray(), COO_H5SparseArr…
Comment: Speeding up of DelayedArray::write_block()
by
Koki
▴ 10
There are a few places inside my `DelayedTensor` package that use `SparseArraySeed`. Will these stop working in next coming BioC 3.18, whe…
Comment: DelayedArray::read_sparse_block
by
Hervé Pagès
16k
No. But I will need to modify the `write_block()` method for TENxRealizationSink implemented in **HDF5Array** to make it handle blocks that…
Votes
Answer: Further analysis after limma regression output
A: collapseReplicates in DESeq2
Answer: DataFrame Construction With Non-standard Column
Steps needed to change design (relevel factors) in DESeq2
Steps needed to change design (relevel factors) in DESeq2
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