Bioconductor GlmLRT()

Showing : glmLRT() • reset

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1.5k

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edger design matrix glmlrt() glmQFTest() paired design

6.0 years ago oakhamwolf • 0

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2.0k

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EdgeR glmlrt() ql f-test

8.0 years ago • updated 7.3 years ago elineverbon ▴ 20

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3.9k

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edger contrast covariate glmlrt()

7.5 years ago Jeff Skinner • 0

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1.3k

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edger differential gene expression glmlrt()

7.8 years ago simarsidhu25 • 0

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3.1k

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edger differential gene expression glmlrt()

7.8 years ago simarsidhu25 • 0

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3.8k

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edger glmfit glmlrt()

updated 8.9 years ago by Aaron Lun ★ 28k • written 8.9 years ago by cadeans • 0

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2.0k

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edger glmlrt() differential expression design and contrast matrix

updated 9.3 years ago by Gordon Smyth 51k • written 9.3 years ago by carlgdeboer • 0

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4.1k

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edger rnaseq glmlrt()

updated 9.6 years ago by James W. MacDonald 67k • written 9.6 years ago by MBWatson • 0

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7.4k

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edgeR glmLRT() multiple factor design multiple testing correction

updated 9.8 years ago by Aaron Lun ★ 28k • written 9.8 years ago by Ekarl2 ▴ 80

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Answer: featureCounts fails to load annotation file by Yang Liao ▴ 440

Hi Yasmin, I'm following up on the issue you're having with featureCounts and the GRCh38 RefSeq annotation. I've been testing featureCounts…

Answer: How to adjust the DESeq2 formula when there is no control group for one factor? by swbarnes2 ★ 1.4k

You are overthinking this. You have two time points, you compare them to each other. You can't compare them to a time point you don't hav…

Answer: Biostrings: Error writing long reads (>200kbps) with writeQualityScaledXStringSe by Aidan ▴ 40

As far as I am aware, the restriction is historical..having a fixed buffer size in the internal C methods makes the algorithms a little sim…

Comment: Diffenrent result from EMBOSS needle and Biostrings pairwiseAlignment ? by rohitsatyam102 ▴ 20

I am facing a similar issue.

Answer: How to subset voomLmFit (MArrayLM) object? by Gordon Smyth 51k

Yes, the current behaviour is absolutely intentional. It doesn't seem to me to be meaningful or useful to try to subset the EList object au…

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A: eBayes warning: zero sample variances

Answer: Are transformed values from rlog /vst log2 normalized counts?

Comment: Are transformed values from rlog /vst log2 normalized counts?

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