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glmLRT()
•
reset
4
votes
15
replies
1.8k
views
Adjusting for procedural effect and deciding on statistical test
EdgeR
glmlrt()
ql f-test
7.6 years ago • updated 6.9 years ago
elineverbon
▴ 20
1
vote
6
replies
1.2k
views
design of edgeR GLM test
edger
differential gene expression
glmlrt()
7.4 years ago
simarsidhu25
• 0
5
votes
7
replies
3.8k
views
How to specify 'contrast' in glmLRT command when treatments in design matrix are named with numbers, not letters
edger
rnaseq
glmlrt()
updated 9.2 years ago by
James W. MacDonald
66k • written 9.2 years ago by
MBWatson
• 0
2
votes
2
replies
1.4k
views
EdgeR User Guide: use of glmLRT vs glmQLF in oral carcinoma Case Study
edger
design matrix
glmlrt()
glmQFTest()
paired design
5.6 years ago
oakhamwolf
• 0
4
votes
7
replies
2.9k
views
Can we use glmQLFit instead of glmFit and then glmLRT in edgeR
edger
differential gene expression
glmlrt()
7.4 years ago
simarsidhu25
• 0
0
votes
7
replies
3.6k
views
Computing contrasts with a covariate using edgeR glmLRT()
edger
contrast
covariate
glmlrt()
7.1 years ago
Jeff Skinner
• 0
4
votes
8
replies
1.9k
views
EdgeR: batches and samples over-specify system, how to contrast un-modeled variables?
edger
glmlrt()
differential expression
design and contrast matrix
updated 8.9 years ago by
Gordon Smyth
50k • written 8.9 years ago by
carlgdeboer
• 0
7
votes
5
replies
3.6k
views
edgeR effects of design on testing main effects and interactions
edger
glmfit
glmlrt()
updated 8.5 years ago by
Aaron Lun
★ 28k • written 8.5 years ago by
cadeans
• 0
6
votes
7
replies
7.2k
views
EdgeR: glmLRT(), Multifactorial designs and correction for multiple testing
edgeR
glmLRT()
multiple factor design
multiple testing correction
updated 9.4 years ago by
Aaron Lun
★ 28k • written 9.4 years ago by
Ekarl2
▴ 80
9 results • Page
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Comment: pathview error
by
Fara
• 0
Thank you for the reply. I already conducted the KEGG enrichment analysis and I got the pathway ID. So there is no doubt it cannot be map…
Comment: Not able to install any Bioconductor 3.18 package [unable to access index]
by
bravaccinimirea
• 0
I am experiencing the same problem, I tried with all the advices I found in similar posts but nothing seems to work
Comment: can't open mghp.osn.xsede.org
by
merv
▴ 120
Seeing this issue today, now with the R 4.3 + Bioc 3.18 version of this package. It is the Bioconductor servers that redirect to this unrel…
Comment: Help with infinite recursion - non-zero exit status in installation of GenomeInf
by
Brandon
▴ 20
I did try again...*repeatedly*...I even tried it on a VM. Thankfully I got it to work on the VM. I still can't get it to work on windows t…
Comment: recount3 problem downloading data from source sra
by
Leonardo Collado Torres
★ 1.1k
Hi, What do you get if you run the following `httr::HEAD()` command? I noticed that you have `libcurl` version 8.3.0 from `curl::curl_vers…
Votes
can't open mghp.osn.xsede.org
Answer: can't open mghp.osn.xsede.org
Help with infinite recursion - non-zero exit status in installation of GenomeInfoDbData
Help with infinite recursion - non-zero exit status in installation of GenomeInfoDbData
Comment: recount3 problem downloading data from source sra
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