Bioconductor GmapR

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BiocViews VariantAnnotation Annotation biocViews Rsubread VariantAnnotation gmapR BiocViews

10.4 years ago Thomas Girke ★ 1.7k

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gmapR GmapGenome error create

9.0 years ago lelemraposo • 0

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GO BSgenome BSgenome gmapR GO BSgenome BSgenome gmapR

updated 11.0 years ago by Michael Lawrence ★ 11k • written 11.0 years ago by Robert Castelo ★ 3.3k

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563

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gmapR

updated 3.5 years ago by Martin Morgan 25k • written 3.5 years ago by conbward • 0

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gmapR gmapR

updated 11.3 years ago by Martin Morgan 25k • written 11.3 years ago by Guest User ★ 13k

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gmapr

updated 6.5 years ago by Michael Lawrence ★ 11k • written 6.5 years ago by karl.nordstroem • 0

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software error gmapr

updated 5.5 years ago by Michael Lawrence ★ 11k • written 5.5 years ago by Amer Ghalawinji • 0

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994

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gmapR

5.3 years ago Kyle Johnsen ▴ 30

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gmapR gmapR

updated 11.3 years ago by Michael Lawrence ★ 11k • written 11.3 years ago by Tim Triche ★ 4.2k

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gmapR

updated 8.5 years ago by Michael Lawrence ★ 11k • written 8.5 years ago by Thomas Sandmann ▴ 90

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gmapr gmapgenome annotationhub fafile

updated 8.5 years ago by Michael Lawrence ★ 11k • written 8.5 years ago by Johannes Rainer ★ 2.0k

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varianttools gmapr

updated 8.5 years ago by Michael Lawrence ★ 11k • written 8.5 years ago by Johannes Rainer ★ 2.0k

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gmapr gmapgenome

updated 8.3 years ago by Michael Lawrence ★ 11k • written 8.3 years ago by sean.taylor • 0

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gmapgenome gmapr fastafile

updated 7.0 years ago by Michael Lawrence ★ 11k • written 7.0 years ago by Kyle Johnsen ▴ 30

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gmapR gmapR

11.1 years ago Dan Tenenbaum ★ 8.2k

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gmapR

9.3 years ago Chao-Jen Wong ▴ 580

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Cancer genomes Rsubread gmapR Cancer genomes Rsubread gmapR

11.7 years ago Martin Morgan 25k

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gmapR

7.4 years ago jls2282 • 0

18 results • Page 1 of 1

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Answer: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k

Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.

Answer: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k

Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by JKim • 0

The 1st model has an interaction term, but the 2nd model doesn't have the interaction term. That makes the difference.

Comment: Ensembl plants at annotationHub? by Daniele • 0

Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k

If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?

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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

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Popular Question to Vincent J. Carey, Jr. 6.7k

Popular Question to Koen Van den Berge ▴ 180