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3.8k

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clusterProfiler GO GO enrichment genesetenrichment

updated 8 weeks ago by jandrade • 0 • written 6.4 years ago by Huang, Lei [BSD] - CRI ▴ 20

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5.0k

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clusterProfiler AnnotationHub GO uniprot

updated 3 months ago by Guido Hooiveld ★ 4.0k • written 3.3 years ago by Alberto • 0

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282

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DNAMethylation GO MethylationArray missMethyl EPICv2

updated 10 weeks ago by belinda.phipson ▴ 40 • written 10 weeks ago by s.malik • 0

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637

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GO biomaRt

updated 10 months ago by James W. MacDonald 65k • written 10 months ago by cstorer • 0

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384

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GO limma CAMERA

updated 3 months ago by Gordon Smyth 50k • written 3 months ago by Tyler Sagendorf ▴ 10

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458

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GO EnrichmentBrowser

updated 3 months ago by James W. MacDonald 65k • written 3 months ago by prity6459 • 0

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437

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go DESeq2

updated 7 months ago by James W. MacDonald 65k • written 7 months ago by Alvin • 0

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GO KEGG gage pathview

1 day ago danalvoronov ▴ 10

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589

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GO ensembldb

7 months ago • updated 6 months ago Rockbar • 0

9 results • Page 1 of 1

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Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80

ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …

Comment: STRINGdb : error with string_db$plot_network() by ninidea • 0

> Does the vignette produce the same error? No. Anyway, I finally solved the problem. I don't know why, but I removed: protocol='http' fr…

Comment: maSigPro genes from clusters by anne-laure • 0

Hello It is a litlle bit late but I do not get how to extract the genes from each cluster identified by see.genes(sigs$sig.genes$Day4vs…

Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80

Your code seems ok. Does the vignette produce the same error? [link to STRINGdb R script vignette][1] [1]: https://www.bioconductor.or…

Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db") by Patadù ▴ 10

Hi @marcelramos Thanks for the clarification. Yes, I have installed `org.Vdahlaie.eg.db` using the code you and Guido suggested and now i…

Votes

Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

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Popular Question to Koen Van den Berge ▴ 180