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goProfiles
•
reset
0
votes
1
reply
722
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I want to convert the go enrichment result to a data frame (tidy data)with two column which one is the gene symbol and the other is go term. Any one…
GO.db
GOfuncR
GO
GOSim
goProfiles
updated 20 months ago by
Basti
▴ 780 • written 20 months ago by
yeluo
• 0
3
votes
9
replies
2.9k
views
Create object "Go3AnnDbBimap" and include it in a org.Xx.eg.db package to use with goProfiles and goTools
goprofiles
AnnotationForge
Bimap
GO
9.7 years ago
artur
▴ 80
0
votes
0
replies
1.6k
views
Ontology lack in goProfiles : no BP or CC just MF
GO
goProfiles
GO
goProfiles
10.2 years ago
Arnaud Mounier
▴ 40
0
votes
0
replies
1.3k
views
error while using goProfiles package on arabidopsis entrez gene IDs
GO
Organism
goProfiles
GO
Organism
goProfiles
10.8 years ago
Marc Carlson
★ 7.2k
0
votes
0
replies
1.7k
views
error while using goProfiles package on arabidopsis entrez gene IDs
goProfiles
goProfiles
10.8 years ago
Guest User
★ 13k
0
votes
2
replies
1.1k
views
Gene Ontologies exploration
goProfiles
GeneAnswers
goProfiles
GeneAnswers
updated 11.4 years ago by
Marc Carlson
★ 7.2k • written 11.4 years ago by
Jose M Garcia Manteiga
▴ 310
0
votes
2
replies
1.1k
views
Profiles
GO
goProfiles
GO
goProfiles
updated 11.7 years ago by
Steve Lianoglou
★ 13k • written 11.7 years ago by
Guest User
★ 13k
0
votes
2
replies
1.5k
views
How to make my own GO.db?
GO
goProfiles
GO
goProfiles
updated 14.0 years ago by
Marc Carlson
★ 7.2k • written 14.0 years ago by
Xiaohui Wu
▴ 280
0
votes
1
reply
1.3k
views
How to cluster genes based on their GO term in Arabidopsis?
GO
Cancer
Prostate
goProfiles
GO
Cancer
Prostate
goProfiles
updated 14.0 years ago by
James W. MacDonald
66k • written 14.0 years ago by
Xiaohui Wu
▴ 280
0
votes
0
replies
797
views
Problem about using "goProfiles"
Category
goProfiles
Category
goProfiles
14.0 years ago
wei tie
▴ 30
0
votes
0
replies
1.1k
views
How to compare GO results
Annotation
GO
topGO
goProfiles
Annotation
GO
topGO
goProfiles
14.8 years ago
Johannes Hanson
▴ 30
0
votes
0
replies
916
views
plotProfiles (goProfiles) and bitmap
GO
graph
goProfiles
GO
graph
goProfiles
15.0 years ago
Jean-Pierre Desvignes
▴ 60
0
votes
8
replies
1.8k
views
PreProcess and Limma 'done'. What directions now?
goProfiles
goProfiles
updated 15.0 years ago by
Steve Lianoglou
★ 13k • written 15.0 years ago by
Massimo Pinto
▴ 390
0
votes
2
replies
1.1k
views
namespace error with goProfiles package
GO
mouse4302
goProfiles
GO
mouse4302
goProfiles
updated 16.0 years ago by
Alex Sanchez
▴ 20 • written 16.0 years ago by
Straubhaar, Juerg
▴ 300
14 results • Page
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Replies
Answer: biomaRt has encountered an unknown server error while using getLDS
by
miriam.lloriansopena
• 0
This has worked very well for me. Thank you for your help!!
Answer: biomaRt has encountered an unknown server error while using getLDS
by
Mike Smith
★ 6.5k
There's a lot to unpack here! First, unfortunatley the getLDS funciontallity started failing with the release of BioMart 106. I've aske…
Comment: Most enriched pathway is not expressed when modifying universe parameter
by
adripel
• 0
Well, I was looking at the result table (enrich18k@result, or yy@result in your example), and it gives every pathway even the non-significa…
Comment: Trouble reading samplesheet in with diffbind to create dba
by
Mallory
• 0
Thank you for your reply! There mustve been something wierd going on with my peak formats as you pointed out. I recalled all the peaks and …
Answer: Trouble reading samplesheet in with diffbind to create dba
by
Anthony
• 0
I was struggling with this today too. For me it happened because my peak files were not in the correct format. The "10 elements" refers to …
Votes
Answer: biomaRt has encountered an unknown server error while using getLDS
A: limma: comparison of repeat measurements - blocking or within-subject correlatio
A: dream vignette says limma-voom repeated measures two-group comparison needs two
Answer: Get the latest gene name from Entrez ID
Get the latest gene name from Entrez ID
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