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goProfiles
•
reset
0
votes
1
reply
1.1k
views
I want to convert the go enrichment result to a data frame (tidy data)with two column which one is the gene symbol and the other is go term. Any one…
GO.db
GOfuncR
GO
GOSim
goProfiles
updated 3.2 years ago by
Basti
▴ 780 • written 3.2 years ago by
yeluo
• 0
3
votes
9
replies
3.7k
views
Create object "Go3AnnDbBimap" and include it in a org.Xx.eg.db package to use with goProfiles and goTools
goprofiles
AnnotationForge
Bimap
GO
11.3 years ago
artur
▴ 80
0
votes
0
replies
2.0k
views
Ontology lack in goProfiles : no BP or CC just MF
GO
goProfiles
GO
goProfiles
11.7 years ago
Arnaud Mounier
▴ 40
0
votes
0
replies
1.6k
views
error while using goProfiles package on arabidopsis entrez gene IDs
GO
Organism
goProfiles
GO
Organism
goProfiles
12.3 years ago
Marc Carlson
★ 7.2k
0
votes
0
replies
2.0k
views
error while using goProfiles package on arabidopsis entrez gene IDs
goProfiles
goProfiles
12.3 years ago
Guest User
★ 13k
0
votes
2
replies
1.4k
views
Gene Ontologies exploration
goProfiles
GeneAnswers
goProfiles
GeneAnswers
updated 12.9 years ago by
Marc Carlson
★ 7.2k • written 12.9 years ago by
Jose M Garcia Manteiga
▴ 310
0
votes
2
replies
1.4k
views
Profiles
GO
goProfiles
GO
goProfiles
updated 13.2 years ago by
Steve Lianoglou
★ 13k • written 13.2 years ago by
Guest User
★ 13k
0
votes
2
replies
2.0k
views
How to make my own GO.db?
GO
goProfiles
GO
goProfiles
updated 15.5 years ago by
Marc Carlson
★ 7.2k • written 15.5 years ago by
Xiaohui Wu
▴ 280
0
votes
1
reply
1.8k
views
How to cluster genes based on their GO term in Arabidopsis?
GO
Cancer
Prostate
goProfiles
GO
Cancer
Prostate
goProfiles
updated 15.5 years ago by
James W. MacDonald
68k • written 15.5 years ago by
Xiaohui Wu
▴ 280
0
votes
0
replies
1.0k
views
Problem about using "goProfiles"
Category
goProfiles
Category
goProfiles
15.5 years ago
wei tie
▴ 30
0
votes
0
replies
1.3k
views
How to compare GO results
Annotation
GO
topGO
goProfiles
Annotation
GO
topGO
goProfiles
16.3 years ago
Johannes Hanson
▴ 30
0
votes
0
replies
1.2k
views
plotProfiles (goProfiles) and bitmap
GO
graph
goProfiles
GO
graph
goProfiles
16.5 years ago
Jean-Pierre Desvignes
▴ 60
0
votes
8
replies
2.5k
views
PreProcess and Limma 'done'. What directions now?
goProfiles
goProfiles
updated 16.6 years ago by
Steve Lianoglou
★ 13k • written 16.6 years ago by
Massimo Pinto
▴ 390
0
votes
2
replies
1.4k
views
namespace error with goProfiles package
GO
mouse4302
goProfiles
GO
mouse4302
goProfiles
updated 17.5 years ago by
Alex Sanchez
▴ 20 • written 17.5 years ago by
Straubhaar, Juerg
▴ 300
14 results • Page
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If you want to share your research progress and microbiome discoveries with colleagues or friends, [snaptroid android][1] download free mak…
Answer: Limma-voom sample weights and impact on DEG numbers
by
Gordon Smyth
53k
I recommend that you always use voomLmFit() instead of the earlier voom() or voomWithQualityWeights() functions. Personally, I would use sa…
Answer: wgcna module preseravtion taking too long?
by
ATpoint
★ 5.0k
WGCNA is not a Bioconductor package, you won't get an answer here. Consider biostars.org or the r/bioinformatics reddit. Note that 10 sampl…
Answer: Question about RE-agnostic mode for intact Hi-C and Micro-C normalization(HiCDCP
by
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• 0
You write quite well, and the content is very interesting. I'll provide you a link to my page [granny 2](https://granny2.io).
Votes
Limma-voom sample weights and impact on DEG numbers
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
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