Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
goProfiles
•
reset
0
votes
1
reply
1.0k
views
I want to convert the go enrichment result to a data frame (tidy data)with two column which one is the gene symbol and the other is go term. Any one…
GO.db
GOfuncR
GO
GOSim
goProfiles
updated 2.9 years ago by
Basti
▴ 780 • written 2.9 years ago by
yeluo
• 0
3
votes
9
replies
3.5k
views
Create object "Go3AnnDbBimap" and include it in a org.Xx.eg.db package to use with goProfiles and goTools
goprofiles
AnnotationForge
Bimap
GO
11.0 years ago
artur
▴ 80
0
votes
0
replies
1.9k
views
Ontology lack in goProfiles : no BP or CC just MF
GO
goProfiles
GO
goProfiles
11.4 years ago
Arnaud Mounier
▴ 40
0
votes
0
replies
1.5k
views
error while using goProfiles package on arabidopsis entrez gene IDs
GO
Organism
goProfiles
GO
Organism
goProfiles
12.1 years ago
Marc Carlson
★ 7.2k
0
votes
0
replies
1.9k
views
error while using goProfiles package on arabidopsis entrez gene IDs
goProfiles
goProfiles
12.1 years ago
Guest User
★ 13k
0
votes
2
replies
1.4k
views
Gene Ontologies exploration
goProfiles
GeneAnswers
goProfiles
GeneAnswers
updated 12.6 years ago by
Marc Carlson
★ 7.2k • written 12.6 years ago by
Jose M Garcia Manteiga
▴ 310
0
votes
2
replies
1.3k
views
Profiles
GO
goProfiles
GO
goProfiles
updated 12.9 years ago by
Steve Lianoglou
★ 13k • written 12.9 years ago by
Guest User
★ 13k
0
votes
2
replies
1.9k
views
How to make my own GO.db?
GO
goProfiles
GO
goProfiles
updated 15.2 years ago by
Marc Carlson
★ 7.2k • written 15.2 years ago by
Xiaohui Wu
▴ 280
0
votes
1
reply
1.7k
views
How to cluster genes based on their GO term in Arabidopsis?
GO
Cancer
Prostate
goProfiles
GO
Cancer
Prostate
goProfiles
updated 15.2 years ago by
James W. MacDonald
68k • written 15.2 years ago by
Xiaohui Wu
▴ 280
0
votes
0
replies
972
views
Problem about using "goProfiles"
Category
goProfiles
Category
goProfiles
15.3 years ago
wei tie
▴ 30
0
votes
0
replies
1.2k
views
How to compare GO results
Annotation
GO
topGO
goProfiles
Annotation
GO
topGO
goProfiles
16.0 years ago
Johannes Hanson
▴ 30
0
votes
0
replies
1.1k
views
plotProfiles (goProfiles) and bitmap
GO
graph
goProfiles
GO
graph
goProfiles
16.2 years ago
Jean-Pierre Desvignes
▴ 60
0
votes
8
replies
2.3k
views
PreProcess and Limma 'done'. What directions now?
goProfiles
goProfiles
updated 16.3 years ago by
Steve Lianoglou
★ 13k • written 16.3 years ago by
Massimo Pinto
▴ 390
0
votes
2
replies
1.4k
views
namespace error with goProfiles package
GO
mouse4302
goProfiles
GO
mouse4302
goProfiles
updated 17.3 years ago by
Alex Sanchez
▴ 20 • written 17.3 years ago by
Straubhaar, Juerg
▴ 300
14 results • Page
1 of 1
Recent ...
Replies
Comment: Heatmap of the Count Matrix
by
ArnulfoByrd
• 0
Perhaps PCA loadings offer a more comprehensive perspective. Now, thinking back, I recall struggling with a similar data reduction dilemma …
Answer: readBam vs read_bam_insert_metrics
by
James W. MacDonald
68k
Depends on what you mean by input. If you mean to ask if you use `readBam` to generate something to use as an argument to `read_bam_insert_…
Answer: How to construct a BSgenome object from a custom genome assembly using BSgenomeF
by
James W. MacDonald
68k
There is an example in the help page for `forgeBSgenomePkgFromTwobitFile`. Have you tried emulating that?
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
by
Gordon Smyth
53k
What you describe sounds a good approach to me. I would also use sample weights (`sample.weights=TRUE` when running `voomLmFit`) and robust…
Comment: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg?
by
Michael Love
43k
I moved your post from an "answer" to a "comment". I don't know about `offst()` function, what is the scale or direction, or whether you a…
Votes
Answer: Limpa Pipeline Order
A: How barcode-plot enrichment is calculated?
A: How barcode-plot enrichment is calculated?
Answer: ROAST compare results with complex design
How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?
Awards
• All
Popular Question
to
rtrivedi1
▴ 10
Popular Question
to
James W. MacDonald
68k
Popular Question
to
Assa Yeroslaviz
★ 1.5k
Popular Question
to
Nik dAK
▴ 10
Popular Question
to
Michael
• 0
Locations
• All
United Kingdom,
36 minutes ago
united kingdom,
5 hours ago
The Cave, 181 Longwood Avenue, Boston, USA,
6 hours ago
WEHI, Melbourne, Australia,
7 hours ago
The city by the bay,
10 hours ago
Traffic: 350 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6