Bioconductor Goprofiles

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540

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GO.db GOfuncR GO GOSim goProfiles

updated 14 months ago by Basti ▴ 740 • written 14 months ago by yeluo • 0

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2.6k

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goprofiles AnnotationForge Bimap GO

9.2 years ago artur ▴ 80

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GO goProfiles GO goProfiles

9.6 years ago Arnaud Mounier ▴ 40

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GO Organism goProfiles GO Organism goProfiles

10.3 years ago Marc Carlson ★ 7.2k

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goProfiles goProfiles

10.3 years ago Guest User ★ 12k

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goProfiles GeneAnswers goProfiles GeneAnswers

updated 10.8 years ago by Marc Carlson ★ 7.2k • written 10.8 years ago by Jose M Garcia Manteiga ▴ 310

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953

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GO goProfiles GO goProfiles

updated 11.2 years ago by Steve Lianoglou 13k • written 11.2 years ago by Guest User ★ 12k

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GO goProfiles GO goProfiles

updated 13.5 years ago by Marc Carlson ★ 7.2k • written 13.5 years ago by Xiaohui Wu ▴ 280

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GO Cancer Prostate goProfiles GO Cancer Prostate goProfiles

updated 13.5 years ago by James W. MacDonald 64k • written 13.5 years ago by Xiaohui Wu ▴ 280

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707

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Category goProfiles Category goProfiles

13.5 years ago wei tie ▴ 30

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968

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Annotation GO topGO goProfiles Annotation GO topGO goProfiles

14.3 years ago Johannes Hanson ▴ 30

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821

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GO graph goProfiles GO graph goProfiles

14.5 years ago Jean-Pierre Desvignes ▴ 60

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1.6k

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goProfiles goProfiles

updated 14.5 years ago by Steve Lianoglou 13k • written 14.5 years ago by Massimo Pinto ▴ 390

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GO mouse4302 goProfiles GO mouse4302 goProfiles

updated 15.5 years ago by Alex Sanchez ▴ 20 • written 15.5 years ago by Straubhaar, Juerg ▴ 300

14 results • Page 1 of 1

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Comment: Correct the batch effect in methylation analysis in R by kyj2226 • 0

Thank you for your response Gordon :) I've already run the code below, just add batch to the limma linear model design <- model.matri…

Answer: Correct the batch effect in methylation analysis in R by Gordon Smyth 49k

You should not apply batch correction functions like harman before a limma analysis. Instead, just add `batch` to the limma linear model. …

Answer: Agilent Microarray Gene Oncology analysis gone wrong by Gordon Smyth 49k

Your use of `coef=1` is incorrect, for reasons explained in the limma User's Guide. If you had simply left `coef` at the default, then thin…

Comment: Normalised counts from RUVg in RUVSeq by Shaimaa Gamal • 0

Hello I was wondering if I should use ruv-corrected counts and ruv lib sizes to create a DGE object that can be used later for DE analysis …

Comment: enrichGOgradient color change by James W. MacDonald 64k

You could look at my answer and extrapolate from there.

Votes

Answer: Correct the batch effect in methylation analysis in R

Answer: enrichGOgradient color change

Answer: Filter genes by expression for voomLmFit

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