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goprofiles
•
reset
0
votes
1
reply
880
views
I want to convert the go enrichment result to a data frame (tidy data)with two column which one is the gene symbol and the other is go term. Any one…
GO.db
GOfuncR
GO
GOSim
goProfiles
updated 2.2 years ago by
Basti
▴ 780 • written 2.2 years ago by
yeluo
• 0
3
votes
9
replies
3.2k
views
Create object "Go3AnnDbBimap" and include it in a org.Xx.eg.db package to use with goProfiles and goTools
goprofiles
AnnotationForge
Bimap
GO
10.2 years ago
artur
▴ 80
0
votes
0
replies
1.7k
views
Ontology lack in goProfiles : no BP or CC just MF
GO
goProfiles
GO
goProfiles
10.6 years ago
Arnaud Mounier
▴ 40
0
votes
0
replies
1.4k
views
error while using goProfiles package on arabidopsis entrez gene IDs
GO
Organism
goProfiles
GO
Organism
goProfiles
11.3 years ago
Marc Carlson
★ 7.2k
0
votes
0
replies
1.8k
views
error while using goProfiles package on arabidopsis entrez gene IDs
goProfiles
goProfiles
11.3 years ago
Guest User
★ 13k
0
votes
2
replies
1.2k
views
Gene Ontologies exploration
goProfiles
GeneAnswers
goProfiles
GeneAnswers
updated 11.8 years ago by
Marc Carlson
★ 7.2k • written 11.8 years ago by
Jose M Garcia Manteiga
▴ 310
0
votes
2
replies
1.2k
views
Profiles
GO
goProfiles
GO
goProfiles
updated 12.2 years ago by
Steve Lianoglou
★ 13k • written 12.2 years ago by
Guest User
★ 13k
0
votes
2
replies
1.7k
views
How to make my own GO.db?
GO
goProfiles
GO
goProfiles
updated 14.5 years ago by
Marc Carlson
★ 7.2k • written 14.5 years ago by
Xiaohui Wu
▴ 280
0
votes
1
reply
1.4k
views
How to cluster genes based on their GO term in Arabidopsis?
GO
Cancer
Prostate
goProfiles
GO
Cancer
Prostate
goProfiles
updated 14.5 years ago by
James W. MacDonald
67k • written 14.5 years ago by
Xiaohui Wu
▴ 280
0
votes
0
replies
883
views
Problem about using "goProfiles"
Category
goProfiles
Category
goProfiles
14.5 years ago
wei tie
▴ 30
0
votes
0
replies
1.1k
views
How to compare GO results
Annotation
GO
topGO
goProfiles
Annotation
GO
topGO
goProfiles
15.3 years ago
Johannes Hanson
▴ 30
0
votes
0
replies
1.0k
views
plotProfiles (goProfiles) and bitmap
GO
graph
goProfiles
GO
graph
goProfiles
15.5 years ago
Jean-Pierre Desvignes
▴ 60
0
votes
8
replies
2.0k
views
PreProcess and Limma 'done'. What directions now?
goProfiles
goProfiles
updated 15.5 years ago by
Steve Lianoglou
★ 13k • written 15.5 years ago by
Massimo Pinto
▴ 390
0
votes
2
replies
1.3k
views
namespace error with goProfiles package
GO
mouse4302
goProfiles
GO
mouse4302
goProfiles
updated 16.5 years ago by
Alex Sanchez
▴ 20 • written 16.5 years ago by
Straubhaar, Juerg
▴ 300
14 results • Page
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Recent ...
Replies
Comment: Running multiple KNN queries in parallel
by
SamGG
▴ 360
Thank you for your detailed answer, I appreciate it and your work.
Answer: Running multiple KNN queries in parallel
by
Aaron Lun
★ 28k
That is correct - you can't pass the prebuilt objects to different processes. Maybe `MulticoreParam()` might work on POSIX systems but I'm …
Answer: RSubread output significantly different from bash Subread output
by
Gordon Smyth
52k
The difference (as ATpoint has correctly pointed out) is that Rsubread::featureCounts counts multi-mapping reads by default whereas the com…
Answer: Deseq2 Error in solve.default(qr.R(qrx)) : 'a' (1 x 0) must be square
by
Michael Love
43k
I would check the rank of your model matrix, and perhaps meet with a local statistician who can help you create an appropriate design matri…
Comment: sva: get a sv for RIN scores
by
gabriel.hoffman
▴ 170
Agreed. I'll add that with small sample size, a covariate can explain some fraction of expression variation even under the null.
Votes
Answer: Running multiple KNN queries in parallel
Answer: Running multiple KNN queries in parallel
Answer: RSubread output significantly different from bash Subread output
Answer: RSubread output significantly different from bash Subread output
Answer: How to annotate a limma Elist raw class object with an annotation file
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Dario Strbenac
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ATpoint
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Gordon Smyth
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