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goProfiles
•
reset
3
votes
9
replies
2.9k
views
Create object "Go3AnnDbBimap" and include it in a org.Xx.eg.db package to use with goProfiles and goTools
goprofiles
AnnotationForge
Bimap
GO
9.6 years ago
artur
▴ 80
0
votes
8
replies
1.8k
views
PreProcess and Limma 'done'. What directions now?
goProfiles
goProfiles
updated 14.9 years ago by
Steve Lianoglou
★ 13k • written 14.9 years ago by
Massimo Pinto
▴ 390
0
votes
2
replies
1.1k
views
namespace error with goProfiles package
GO
mouse4302
goProfiles
GO
mouse4302
goProfiles
updated 15.9 years ago by
Alex Sanchez
▴ 20 • written 15.9 years ago by
Straubhaar, Juerg
▴ 300
0
votes
2
replies
1.5k
views
How to make my own GO.db?
GO
goProfiles
GO
goProfiles
updated 13.9 years ago by
Marc Carlson
★ 7.2k • written 13.9 years ago by
Xiaohui Wu
▴ 280
0
votes
2
replies
1.0k
views
Profiles
GO
goProfiles
GO
goProfiles
updated 11.6 years ago by
Steve Lianoglou
★ 13k • written 11.6 years ago by
Guest User
★ 13k
0
votes
2
replies
1.1k
views
Gene Ontologies exploration
goProfiles
GeneAnswers
goProfiles
GeneAnswers
updated 11.2 years ago by
Marc Carlson
★ 7.2k • written 11.3 years ago by
Jose M Garcia Manteiga
▴ 310
0
votes
1
reply
688
views
I want to convert the go enrichment result to a data frame (tidy data)with two column which one is the gene symbol and the other is go term. Any one…
GO.db
GOfuncR
GO
GOSim
goProfiles
updated 19 months ago by
Basti
▴ 780 • written 19 months ago by
yeluo
• 0
0
votes
1
reply
1.2k
views
How to cluster genes based on their GO term in Arabidopsis?
GO
Cancer
Prostate
goProfiles
GO
Cancer
Prostate
goProfiles
updated 13.9 years ago by
James W. MacDonald
65k • written 13.9 years ago by
Xiaohui Wu
▴ 280
0
votes
0
replies
1.6k
views
Ontology lack in goProfiles : no BP or CC just MF
GO
goProfiles
GO
goProfiles
10.1 years ago
Arnaud Mounier
▴ 40
0
votes
0
replies
1.2k
views
error while using goProfiles package on arabidopsis entrez gene IDs
GO
Organism
goProfiles
GO
Organism
goProfiles
10.7 years ago
Marc Carlson
★ 7.2k
0
votes
0
replies
1.0k
views
How to compare GO results
Annotation
GO
topGO
goProfiles
Annotation
GO
topGO
goProfiles
14.7 years ago
Johannes Hanson
▴ 30
0
votes
0
replies
780
views
Problem about using "goProfiles"
Category
goProfiles
Category
goProfiles
13.9 years ago
wei tie
▴ 30
0
votes
0
replies
1.7k
views
error while using goProfiles package on arabidopsis entrez gene IDs
goProfiles
goProfiles
10.7 years ago
Guest User
★ 13k
0
votes
0
replies
898
views
plotProfiles (goProfiles) and bitmap
GO
graph
goProfiles
GO
graph
goProfiles
14.9 years ago
Jean-Pierre Desvignes
▴ 60
14 results • Page
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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I am working with mouse data. I don't know how to do this, but I will go through it. Can you help me with the second question? how do we …
Comment: [Mfuzz] Error in cmeans(exprs(eset)
by
Caio
• 0
You can have this problem (lines with variance equal to zero) when you run experiments and obtain the data with more samples and use fewer …
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
The left plot indicates you should use genome segmentation. It is what is called "nonstationary" meaning it looks like there are distinct r…
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
gene_bioconductor
▴ 10
Thanks for your thoughtful and detailed comment, Gordon
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I looked into the genomic distributions. Please see the screenshot attatched ![ distrubution for female loci, boot1 and boot2][1] how do …
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