Bioconductor Gosim

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GOSim GOSemSim

updated 14 months ago by Lluís Revilla Sancho ▴ 730 • written 14 months ago by eliska.ochodkova ▴ 10

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680

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GO.db GOfuncR GO GOSim goProfiles

updated 19 months ago by Basti ▴ 780 • written 19 months ago by yeluo • 0

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823

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GOSim

updated 5.5 years ago by Lluís Revilla Sancho ▴ 730 • written 5.5 years ago by monifass ▴ 10

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1.4k

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gosim gosemsim

updated 7.1 years ago by Lluís Revilla Sancho ▴ 730 • written 8.6 years ago by s.apocarpum ▴ 10

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2.0k

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GO Yeast GOSim GO Yeast GOSim

updated 7.1 years ago by solis • 0 • written 11.9 years ago by Guest User ★ 13k

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990

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Yeast Organism GOSim Yeast Organism GOSim

11.6 years ago Pablo Andretta Jaskowiak ▴ 10

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832

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GOSim GOSim

11.7 years ago ANIRBAN BHAR ▴ 60

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1.3k

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GO Organism biomaRt GOSim GO Organism biomaRt GOSim

updated 12.7 years ago by Olivier Lucas ▴ 40 • written 12.7 years ago by Marc Carlson ★ 7.2k

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1.2k

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GO Organism biomaRt GOSim GO Organism biomaRt GOSim

12.7 years ago Olivier Lucas ▴ 40

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1.2k

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GOSim GOSim

updated 13.0 years ago by Wolfgang Huber ★ 13k • written 13.0 years ago by LEMAITRE Hervé Université Paris Sud ▴ 10

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1.2k

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Annotation GO Yeast biomaRt GOSemSim GOSim Annotation GO Yeast biomaRt GOSemSim GOSim

updated 14.6 years ago by Marc Carlson ★ 7.2k • written 14.7 years ago by Gang Chen ▴ 20

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Comment: Help with error using camera() in limma by Chris • 0

Thanks James! I fixed the error. I try gene symbol instead of entrez and it worked.

Comment: limma for gene expression analysis with big and unbalanced sample size by XW • 0

Could you explain more about the comment "there are no problems with using limma for unbalanced data sets" ? thanks.

Comment: Limma, eBayes different sample size of groups and adjustment by XW • 0

Could you explain more about how the analysis self-correct the different sample sizes when calling DEGs in limma? Thanks

Answer: How do I select a GC file (gc.wig)? (How to determine the inputdata of HMMcopy) by James W. MacDonald 65k

The section of the vignette that is *directly above the one you quote* says that you can use the HMMcopy utils to do all three things. And …

Comment: Help with error using camera() in limma by James W. MacDonald 65k

Again, this is where you need to read the help page and try to diagnose. It says ``` index: an index vector or a list of index vectors. …

Votes

C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB

C: Extremely big genes in annotation TxDb packages

Make custom Txdb class objects from Txdb

Comment: Help with error using camera() in limma

Answer: Help with error using camera() in limma

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