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GoSemSim - function mgeneSim() is resulting in similarity matrix without 1s on diagonal
GOSim GOSemSim
updated 17 months ago by ▴ 730 • written 17 months ago by ▴ 10
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758
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I want to convert the go enrichment result to a data frame (tidy data)with two column which one is the gene symbol and the other is go term. Any one…
GO.db GOfuncR GO GOSim goProfiles
updated 21 months ago by ▴ 780 • written 22 months ago by • 0
3
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3
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894
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compute similarities of GOTerms with GOSim in non-human species
GOSim
updated 5.8 years ago by ▴ 730 • written 5.8 years ago by ▴ 10
0
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1
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1.4k
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Normalization of specificity level (level of depth) of GO terms dataset
gosim gosemsim
updated 7.3 years ago by ▴ 730 • written 8.8 years ago by ▴ 10
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2
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2.1k
views
GOSim yeast
GO Yeast GOSim GO Yeast GOSim
updated 7.4 years ago by • 0 • written 12.2 years ago by ★ 13k
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1.0k
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GOSim Problem
Yeast Organism GOSim Yeast Organism GOSim
11.8 years ago Pablo Andretta Jaskowiak ▴ 10
0
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0
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870
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Problem while working with GOSim package
GOSim GOSim
11.9 years ago ANIRBAN BHAR ▴ 60
0
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2
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1.4k
views
Simple GO pie and GOSim install error
GO Organism biomaRt GOSim GO Organism biomaRt GOSim
updated 12.9 years ago by ▴ 40 • written 12.9 years ago by ★ 7.2k
0
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0
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1.3k
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Simple GO pie and GOSim install error
GO Organism biomaRt GOSim GO Organism biomaRt GOSim
12.9 years ago Olivier Lucas ▴ 40
0
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3
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1.3k
views
Query Gene Ontology
GOSim GOSim
updated 13.2 years ago by ★ 13k • written 13.2 years ago by ▴ 10
0
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1
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1.3k
views
Gene ID of yeast in GOSemSim and other GO related package may need update
Annotation GO Yeast biomaRt GOSemSim GOSim Annotation GO Yeast biomaRt GOSemSim GOSim
updated 14.9 years ago by ★ 7.2k • written 14.9 years ago by ▴ 20
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Comment: 'path' must be string by James W. MacDonald 66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string by cpierce2 • 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest by Robert • 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta by Guido Hooiveld ★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta by Michael Love 42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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Scholar to Michael Love 42k
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