Showing : gosemsim • reset
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GOSemSim - mgeneSim weird output
GOSemSim similarity
updated 4 months ago by ▴ 720 • written 4 months ago by • 0
1
vote
1
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424
views
GoSemSim - function mgeneSim() is resulting in similarity matrix without 1s on diagonal
GOSim GOSemSim
updated 9 months ago by ▴ 720 • written 9 months ago by ▴ 10
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2
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1.1k
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Can't install GO.db
GOexpress GO.db GOSemSim
12 months ago Chruut • 0
0
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0
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514
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using annotation data of an organism(eg. Oryza sativa) from AnnotationHub for mgoSim
AnnotationHubSoftware GOSemSim annotation
22 months ago Amandeep • 0
0
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3
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1.5k
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using the goana function from edgeR
RNASeq edgeR GO GOSemSim
updated 22 months ago by 48k • written 22 months ago by ▴ 70
0
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1
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940
views
is there an R library to compute semantic similarity in SNOMED ontology?
goSemSim snomed semantic similarity
updated 3.2 years ago by 6.7k • written 3.2 years ago by • 0
0
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1
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849
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GOSemSim: "godata" function can not run using self-made org.db.package.
GOSemSim makeOrgPackage godata
updated 3.4 years ago by 64k • written 3.4 years ago by • 0
0
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1
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1.5k
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GO vs GOALL in rrvgo and GOSemSim
rrvgo GOSemSim GO.db
3.5 years ago Jenny Drnevich ★ 2.0k
1
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1
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1.1k
views
How to get GOSemSim work on custom packages built with AnnotationForge
Guangchuang Yu GOSemSim AnnotationForge
updated 3.6 years ago by 3.9k • written 3.6 years ago by • 0
1
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3
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988
views
Meaning of NA in geneSim result using GOSemSim
GOSemSim Dnet
4.4 years ago helenlong1 • 0
0
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1
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709
views
Using GoSemSim with other Ontologies
GOSemSim
updated 4.4 years ago by ▴ 720 • written 4.4 years ago by • 0
3
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12
replies
2.1k
views
Trouble installing GOSemSim
GOSemSim S4Vectors
4.7 years ago sergi.picart ▴ 20
0
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1
reply
804
views
Gene similarity by GOSemSim
gosemsim mgenesim
4.9 years ago athirak1986 • 0
0
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0
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877
views
GOSemSim - slow for BP terms
gosemsim go enrichment go semantic similarity
5.0 years ago nooshin ▴ 300
0
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2
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1.0k
views
(GOSemSim package) secondary GO terms generating NA values
gosemsim
updated 5.0 years ago by ★ 1.2k • written 5.0 years ago by • 0
2
votes
2
replies
1.6k
views
Error: could not find function "godata"
gosemsim
5.4 years ago anton.kratz ▴ 60
0
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1
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1.0k
views
GO similarity by GOSemSim
gosemsim similarity
5.5 years ago ahatashkar • 0
8
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5
replies
2.1k
views
Error in .checkKeys(value, Lkeys(x), x@ifnotfound) : value for "GO:0000059" not found
GOSemSim gosemsim gene ontology
updated 5.8 years ago by • 0 • written 5.8 years ago by ▴ 60
0
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1
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1.2k
views
Normalization of specificity level (level of depth) of GO terms dataset
gosim gosemsim
updated 6.7 years ago by ▴ 720 • written 8.1 years ago by ▴ 10
1
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12
replies
2.9k
views
Using GOsemsim to calculate semantic similarity between orthologus genes of two species
GOsemsim Gene ontology semantic similarity across species
updated 7.0 years ago by ★ 1.2k • written 7.0 years ago by ▴ 10
0
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5
replies
1.4k
views
Using mgeneSim with Ensembl ids
Ensembl GOsemsim GO semantic similarity
updated 7.3 years ago by ★ 1.2k • written 7.3 years ago by ▴ 10
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4
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1.3k
views
problem of GOSemSim R package operation geneSim()
gosemsim
7.6 years ago bnembarekmarwa • 0
1
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1
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1.2k
views
GOSemSim Package - mgeneSim() function / In is.na(go) : is.na() applied to non-(list or vector) of type 'NULL'
GOSemSim mgeneSim
updated 7.6 years ago by ★ 1.2k • written 7.6 years ago by • 0
0
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9
replies
2.7k
views
expired SQLiteConnection in GoSemSim package.
gene ontology GOSemsim
updated 8.3 years ago by ▴ 10 • written 8.6 years ago by • 0
0
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4
replies
1.7k
views
GOterm semantic similarity with non-reference organism
gosemsim go gene ontology
8.6 years ago cpcantalapiedra • 0
1
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2
replies
1.7k
views
GOSemSim problem for yeast proteins
GOSemSim yeast
updated 8.8 years ago by ★ 1.2k • written 8.8 years ago by ▴ 10
0
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0
replies
1.5k
views
DOSE: an R/Bioconductor package for Disease Ontology Semantic and Enrichment analysis
enrichment genesetenrichment dose gosemsim
9.0 years ago Guangchuang Yu ★ 1.2k
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1
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1.4k
views
GOSemSim function, clusterSim throws expired SQLiteConnection error
GO GOSemSim GO GOSemSim
updated 10.0 years ago by ★ 1.2k • written 10.0 years ago by ★ 12k
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0
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1.1k
views
GOSemSim mgeneSim GO.BP calculation time
GO GOSemSim GO GOSemSim
11.2 years ago Guangchuang Yu ★ 1.2k
0
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0
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840
views
GOSemSim mgeneSim GO.BP calculation time
GO GOSemSim GO GOSemSim
11.3 years ago Guest User ★ 12k
0
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1
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1.3k
views
(pack: GOSemSim) NA semantic similarities between gene clusters
GO SemSim GOSemSim GO SemSim GOSemSim
updated 11.4 years ago by ★ 1.2k • written 11.4 years ago by ★ 12k
0
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1
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1.1k
views
GOSemSim comparison between species
Yeast GOSemSim Yeast GOSemSim
updated 11.5 years ago by ★ 8.2k • written 11.5 years ago by ▴ 10
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1
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1.1k
views
Gene ID of yeast in GOSemSim and other GO related package may need update
Annotation GO Yeast biomaRt GOSemSim GOSim Annotation GO Yeast biomaRt GOSemSim GOSim
updated 14.2 years ago by ★ 7.2k • written 14.2 years ago by ▴ 20
33 results • Page 1 of 1
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Comment: DESeq: Error in DESeqDataSet(se, design = design, ignoreRank) : some values i by ATpoint ★ 3.6k
What is the output of below_zero <- apply(miRNA_counts < 0, 1, sum) > 0 miRNA_counts[below_zero,,drop=FALSE]
Comment: Problem loading HDF5Array in R 4.3.2 by Mike Smith ★ 6.2k
Based on the error message this looks like the "invalid permissions" are referring to something in memory rather than your file system. If…
Comment: Problem making orgdb package for bacteria (Pseudomonas) using annotation hub and by Aastha Kapoor • 0
After several attempts the code has worked. I connected to a faster internet connection. set the timeout (1000000) and run the command. I …
Comment: DESeq2 estimateSizeFactors iterate takes too long by Karthik • 0
Hello, I agree with you, and we are in process of working with collaborators, but I wanted to get a general opinion on the data and get a …
Comment: It's possible to use clusterProfiler without an annotationDBI package by Guido Hooiveld ★ 3.8k
Code to show it works: > library(clusterProfiler) > > ## use provided 10 IDs, plus as last one add ID that has a GO annotati…
Votes
Comment: Ensembl down???
Answer: Limma/DESeq2 for unbalanced nested design (paired samples)
Result from GSEA for non-model organism not as expected
Comment: DESeq2 estimateSizeFactors iterate takes too long
Answer: DESeq2 estimateSizeFactors iterate takes too long
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