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GoSemSim - function mgeneSim() is resulting in similarity matrix without 1s on diagonal
GOSim GOSemSim
updated 15 months ago by ▴ 730 • written 15 months ago by ▴ 10
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697
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I want to convert the go enrichment result to a data frame (tidy data)with two column which one is the gene symbol and the other is go term. Any one…
GO.db GOfuncR GO GOSim goProfiles
updated 19 months ago by ▴ 780 • written 19 months ago by • 0
3
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3
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835
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compute similarities of GOTerms with GOSim in non-human species
GOSim
updated 5.6 years ago by ▴ 730 • written 5.6 years ago by ▴ 10
0
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1.4k
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Normalization of specificity level (level of depth) of GO terms dataset
gosim gosemsim
updated 7.1 years ago by ▴ 730 • written 8.6 years ago by ▴ 10
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2
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2.0k
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GOSim yeast
GO Yeast GOSim GO Yeast GOSim
updated 7.2 years ago by • 0 • written 12.0 years ago by ★ 13k
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995
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GOSim Problem
Yeast Organism GOSim Yeast Organism GOSim
11.6 years ago Pablo Andretta Jaskowiak ▴ 10
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839
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Problem while working with GOSim package
GOSim GOSim
11.7 years ago ANIRBAN BHAR ▴ 60
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2
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1.3k
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Simple GO pie and GOSim install error
GO Organism biomaRt GOSim GO Organism biomaRt GOSim
updated 12.7 years ago by ▴ 40 • written 12.7 years ago by ★ 7.2k
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0
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1.2k
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Simple GO pie and GOSim install error
GO Organism biomaRt GOSim GO Organism biomaRt GOSim
12.7 years ago Olivier Lucas ▴ 40
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3
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1.2k
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Query Gene Ontology
GOSim GOSim
updated 13.0 years ago by ★ 13k • written 13.0 years ago by ▴ 10
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1
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1.2k
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Gene ID of yeast in GOSemSim and other GO related package may need update
Annotation GO Yeast biomaRt GOSemSim GOSim Annotation GO Yeast biomaRt GOSemSim GOSim
updated 14.7 years ago by ★ 7.2k • written 14.7 years ago by ▴ 20
11 results • Page 1 of 1
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Comment: Ensembl plants at annotationHub? by Daniele • 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Comment: STRINGdb : error with string_db$plot_network() by ninidea • 0
> Does the vignette produce the same error? No. Anyway, I finally solved the problem. I don't know why, but I removed: protocol='http' fr…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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