Showing : graph • reset
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Problem with limma2biomaRt and MBNI custom CDF
Annotation GO cdf DynDoc genefilter tkWidgets affy graph limma RBGL biomaRt Category
updated 18.8 years ago by 68k • written 18.8 years ago by ▴ 300
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4
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[R-SIG-Mac] Mac os x graphviz-Rgraphviz problem
Biobase annotate geneplotter graph Rgraphviz BUS Biobase annotate geneplotter graph BUS
updated 18.8 years ago by ★ 7.4k • written 18.8 years ago by ★ 6.5k
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Rgraphviz on Fedora Core 6
graph graph
18.8 years ago Byron Wallace ▴ 30
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2
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1.7k
views
OSX binary graphviz, binary Rgraphviz install problems
Biobase graph Rgraphviz Biobase graph Rgraphviz
updated 18.8 years ago by ★ 7.4k • written 18.8 years ago by ▴ 60
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0
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1.5k
views
Mac os x graphviz-Rgraphviz problem
Biobase annotate graph Rgraphviz BUS Biobase annotate graph Rgraphviz BUS
18.8 years ago Gavai, Anand ▴ 40
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1
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1.2k
views
Pathway Interaction Database with BioC?
graph graph
updated 18.9 years ago by ▴ 510 • written 18.9 years ago by ▴ 210
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3
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1.6k
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GOstats hyperGTest question
Biobase annotate genefilter multtest graph Biobase annotate genefilter multtest graph
updated 18.9 years ago by ★ 7.4k • written 18.9 years ago by ▴ 80
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5
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2.2k
views
Rgraphviz problem
annotate graph Rgraphviz annotate graph Rgraphviz
updated 18.9 years ago by ★ 7.4k • written 18.9 years ago by ▴ 450
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5
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Problem with Rgraphviz on OSX with libgvc
graph Rgraphviz charm graph Rgraphviz charm
updated 18.9 years ago by ★ 7.4k • written 18.9 years ago by ▴ 80
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1.2k
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adding a color key scale to a DAG graph for Gene ontologies
graph graph
18.9 years ago Li.Long@isb-sib.ch ▴ 510
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6
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2.2k
views
GOstats and custom annotation problem
Annotation GO annotate genefilter graph AnnBuilder RBGL GOstats Category Annotation GO
updated 18.9 years ago by 21k • written 18.9 years ago by ▴ 310
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841
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post-doctoral fellowship in computational methods for systems genetics
Genetics graph Genetics graph
18.9 years ago Xinxia Peng ▴ 120
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0
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669
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Rgraphviz update for BioC 1.9
graph Rgraphviz graph Rgraphviz
18.9 years ago Kasper Daniel Hansen ★ 6.5k
0
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1
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1.2k
views
GOENTREZID2GO hard-coded in GOstats:makeGOGraph
Annotation GO Network Yeast graph GOstats Annotation GO Network Yeast graph GOstats
updated 19.0 years ago by ★ 7.4k • written 19.0 years ago by ★ 1.1k
0
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11
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3.4k
views
trouble hacking plotPCA
GO Survival Biobase genefilter affy affydata graph limma gcrma matchprobes affyPLM RBGL
updated 19.0 years ago by ▴ 10 • written 19.0 years ago by ★ 2.2k
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0
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875
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GOstat
GO graph GO graph
19.0 years ago Seth Falcon ★ 7.4k
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1
reply
1.0k
views
background correction
graph limma graph limma
updated 19.0 years ago by ★ 2.2k • written 19.0 years ago by ▴ 160
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1
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1.5k
views
warning from make.cdf.package - FYI
GO Survival cdf Biobase annotate genefilter graph makecdfenv limma gcrma matchprobes GO
updated 19.1 years ago by 68k • written 19.1 years ago by ★ 2.2k
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5
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2.2k
views
Importing CDF file for custom array using makecdfenv
Microarray GO Survival Cancer cdf Biobase annotate genefilter affy graph makecdfenv GO
updated 19.1 years ago by ▴ 20 • written 19.1 years ago by ★ 2.2k
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0
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1.5k
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problems with Affy vignette and affybatch objects
GO Survival cdf Biobase annotate genefilter multtest affy affydata graph limma gcrma
19.1 years ago Martin Morgan 25k
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4
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1.6k
views
problems with Affy vignette and affybatch objects
GO Survival cdf Biobase annotate genefilter multtest reposTools affy affydata graph GO
updated 19.1 years ago by 25k • written 19.1 years ago by ★ 2.2k
0
votes
3
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2.4k
views
Situation of the legend in the plotPCA of the affycoretools library
GO Survival cdf annotate genefilter multtest affy graph limma RBGL GOstats Category GO
updated 19.2 years ago by 68k • written 19.2 years ago by ▴ 350
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3
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1.2k
views
removeEdge: strange error
graph graph
19.2 years ago Dan Bebber ▴ 50
0
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1
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1.6k
views
Rgraphviz - neato layout - edge weights have no effect
graph graph
updated 19.2 years ago by ▴ 510 • written 19.3 years ago by ▴ 10
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1
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1.5k
views
[R] problem loading affycoretools - solved!
Biobase Ruuid genefilter multtest graph limma gcrma matchprobes affyPLM RBGL simpleaffy
updated 19.3 years ago by ★ 7.4k • written 19.3 years ago by ★ 2.2k
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2
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1.8k
views
problem loading affycoretools
Survival hgu95av2 Biobase Ruuid annotate genefilter multtest affydata graph limma gcrma
19.3 years ago Jenny Drnevich ★ 2.2k
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2
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1.5k
views
R CMD check and RUnit
graph graph
19.3 years ago Gorjanc Gregor ▴ 140
0
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1
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2.2k
views
Limma function plotDensities question
graph limma graph limma
updated 19.4 years ago by ★ 2.2k • written 19.4 years ago by ▴ 70
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0
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900
views
display goCluster graph with specific go term
GO Visualization Clustering graph goCluster GO Visualization Clustering graph goCluster
19.5 years ago Tabare Mourot ▴ 100
0
votes
0
replies
1.4k
views
blocking in limma gives an estimability problem
GO hgu95av2 Ruuid multtest affy graph limma RBGL qvalue Category affyio GO hgu95av2
19.5 years ago Pedro López Romero ▴ 360
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votes
2
replies
1.8k
views
problem with latest version of graph
GO annotate genefilter multtest affy graph Rgraphviz RBGL GOstats affyio affycoretools
19.5 years ago Kimpel, Mark W ▴ 890
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4
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1.8k
views
help with large Rgraphviz output
graph DECIPHER graph DECIPHER
updated 19.5 years ago by ★ 7.4k • written 19.5 years ago by ▴ 890
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0
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1.0k
views
R hangs when applying johnson.all.pairs.sp (in library RBGL) to some graphs
graph RBGL graph RBGL
19.5 years ago Li.Long@isb-sib.ch ▴ 510
0
votes
1
reply
576
views
R hangs when applying johnson.all.pairs.sp (in library RBGL) to some graphs
graph graph
19.5 years ago Seth Falcon ★ 7.4k
0
votes
14
replies
3.6k
views
RBGL 1.8.1 installation error on linux
Cancer graph RBGL Cancer graph RBGL
updated 19.5 years ago by ▴ 510 • written 19.6 years ago by ▴ 300
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0
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781
views
graph package users: bug fixes available
graph graph
19.5 years ago Seth Falcon ★ 7.4k
0
votes
0
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1.3k
views
RBGL, shortest paths, edge weights, and the new graph class
SystemsBiology graph RBGL SystemsBiology graph RBGL
19.6 years ago Seth Falcon ★ 7.4k
0
votes
0
replies
628
views
Bug fix in graph package, 1.10.2 now available
graph graph
19.6 years ago Seth Falcon ★ 7.4k
0
votes
1
reply
1.1k
views
johnson.all.pairs.sp (RBGL) causes R to hang with certain graphs
graph RBGL graph RBGL
updated 19.6 years ago by ▴ 50 • written 19.6 years ago by ★ 7.4k
0
votes
0
replies
690
views
johnson.all.pairs.sp (RBGL) causes R to hang with certain graphs
graph graph
19.6 years ago Dan Bebber ▴ 50
0
votes
0
replies
621
views
R hangs when applying johnson.all.pairs.sp (in library RBGL) to some graphs
graph graph
19.6 years ago Dan Bebber ▴ 10
0
votes
0
replies
1.1k
views
What's new in the graph package
graph graph
19.6 years ago Seth Falcon ★ 7.4k
0
votes
0
replies
921
views
Fwd: Rgraphviz installation problem - redefinition - conflicting types
graph Rgraphviz graph Rgraphviz
19.7 years ago Nicolas Simonis ▴ 20
0
votes
2
replies
1.4k
views
Fwd: Rgraphviz installation problem - redefinition - conflicting types
Cancer graph Rgraphviz Cancer graph Rgraphviz
updated 19.7 years ago by ★ 7.4k • written 19.7 years ago by ▴ 20
0
votes
0
replies
1.1k
views
Rgraphviz rendering
graph graph
19.7 years ago Bornman, Daniel M ▴ 110
0
votes
5
replies
2.3k
views
extracting interactions between members of the KEGG pathways
Pathways Infrastructure Cancer graph Pathways Infrastructure Cancer graph
updated 19.7 years ago by ★ 5.5k • written 19.7 years ago by ▴ 90
0
votes
0
replies
794
views
problems with GO package data
GO Cancer hgu95av2 probe Biobase annotate genefilter multtest graph GOstats GO Cancer
19.8 years ago Yu-An Dong ▴ 40
0
votes
0
replies
870
views
Graph Layout
graph RBGL graph RBGL
19.8 years ago Li Long ▴ 120
0
votes
1
reply
3.3k
views
Displaying multiple survival curves on one graph
Survival graph Survival graph
updated 20.0 years ago by ★ 7.4k • written 20.0 years ago by ▴ 30
0
votes
1
reply
1.2k
views
rbind in annaffy problem
GO hgu95av2 rat2302 cdf annotate affy graph annaffy RBGL GOstats biomaRt GO hgu95av2
updated 20.0 years ago by 68k • written 20.0 years ago by ▴ 890
360 results • Page 6 of 8
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Comment: problem reading bam files into nucleR by efoss ▴ 10
I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…
Answer: two questions about limma by Gordon Smyth 53k
Answered here: https://support.bioconductor.org/p/16318/
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0
Thank you very much! will take that into consideration
Comment: Large logFC but somewhat high FDR by JKim • 0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.
Comment: upstream git branches of bioc-release by Jeroen ▴ 10
OK I have updated https://bioc-release.r-universe.dev accordingly. Let me know if you find version differences when mirroring binaries.
Votes
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
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