Showing : graph • reset
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MACAT gene list. Over and under expressed
graph macat graph macat
20.0 years ago Giulio Di Giovanni ▴ 540
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[Bioc-devel] Draw volcanoplot in Limma
Microarray graph Microarray graph
updated 20.1 years ago by ▴ 250 • written 20.1 years ago by 53k
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Draw volcanoplot in Limma
Microarray graph Microarray graph
20.1 years ago Edoardo Giacopuzzi ▴ 20
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hexbin in R 2.2.0 - installation problem
graph hexbin limma graph hexbin limma
20.1 years ago Nicholas Lewin-Koh ▴ 430
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4
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hexbin in R 2.2.0 - installation problem
graph hexbin graph hexbin
updated 20.1 years ago by ▴ 320 • written 20.1 years ago by ★ 6.0k
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UPDATE: a problem with Metadat package: hgu133a2 ----- Fwd: RE: Should BE964473 be mapped to Hs. 333958 or Hs. 282260?
Annotation GO Cancer hgu95av2 hu6800 probe annotate affy graph RBGL GOstats Annotation
20.1 years ago Shi, Tao ▴ 720
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some experiences and some troubles with GraphAT package
GO graph PROcess GraphAT GO graph PROcess GraphAT
updated 20.2 years ago by ★ 7.4k • written 20.2 years ago by ▴ 70
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problem with GOcluster
Annotation graph goCluster Annotation graph goCluster
updated 20.3 years ago by ▴ 10 • written 20.3 years ago by ▴ 890
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simpleaffy qc probes ratio
cdf graph simpleaffy cdf graph simpleaffy
20.4 years ago Paul.Delmar@serono.com ▴ 10
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Many missing GO terms from GOHyperG call using mgu74av2
GO Survival hgu95av2 mgu74av2 Ruuid annotate multtest affy graph annaffy RBGL GOstats
updated 20.4 years ago by ★ 7.4k • written 20.4 years ago by ★ 1.4k
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3
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How to plot the graph object
graph Rgraphviz graph Rgraphviz
updated 20.6 years ago by ▴ 10 • written 20.6 years ago by ▴ 40
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the edgeNames( ), and the label for the edge in a node-edge plot created in Graphviz
graph Rgraphviz convert graph Rgraphviz convert
20.6 years ago Seth Falcon ★ 7.4k
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the edgeNames( ), and the label for the edge in a node-edge plot created in Graphviz
graph convert graph convert
20.6 years ago Yilin Liu ▴ 40
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3
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A question about the construction of a node-link graph based on incident matrix
graph graph
updated 20.6 years ago by ★ 13k • written 20.6 years ago by ▴ 40
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simLL method in GOstats
GO Cancer graph GO Cancer graph
20.6 years ago rgentleman ★ 5.5k
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745
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simLL method in GOstats
GO graph GO graph
20.6 years ago Seth Falcon ★ 7.4k
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questions about agilent 44k array
graph marray graph marray
20.8 years ago xuejun qin ▴ 10
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3
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1.4k
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Questions for Affy package on hist() and boxplot()
affy graph affy graph
20.8 years ago Luo, Wen ▴ 50
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1
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Colours in degradation courve
graph graph
updated 20.8 years ago by 68k • written 20.8 years ago by ▴ 260
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1.6k
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kyte and doolittle hydropathy values/plot - sub + sliding window mean
graph convert graph convert
21.0 years ago Matthew Hannah ▴ 940
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2
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mva.pairs parameters
graph graph
21.0 years ago Beth Wilmot ▴ 120
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2
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Installation Problem on OS X
GO geneplotter graph Rgraphviz pamr globaltest GO geneplotter graph Rgraphviz pamr
updated 21.0 years ago by ▴ 680 • written 21.0 years ago by ▴ 10
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750
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Rgraphviz SegFaults on plot
graph graph
updated 21.0 years ago by ★ 3.9k • written 21.0 years ago by ▴ 10
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1
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1.4k
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OS X, Rgraphviz, bioconductor
graph Rgraphviz PROcess graph Rgraphviz PROcess
updated 21.1 years ago by ▴ 430 • written 21.1 years ago by ▴ 30
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751
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automation / interactivity of plots on S-PLUS
graph graph
21.1 years ago Florence Combes ▴ 120
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1.6k
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error in loading affy (R 2.0), Thank you
Normalization GO Clustering moe430a moe430b probe Ruuid rhdf5 multtest affy graph limma
21.1 years ago Pintilie, Melania ▴ 50
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Problem installing graph package
Ruuid rhdf5 graph hexbin Rgraphviz Ruuid rhdf5 graph hexbin Rgraphviz
updated 21.1 years ago by ★ 5.5k • written 21.1 years ago by ▴ 50
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GO graph Error in .local(x, y, ...) : Object "drawAgNode" not found
GO graph GO graph
21.1 years ago SAURIN ★ 1.1k
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Rgraphviz question
graph Rgraphviz graph Rgraphviz
21.1 years ago Sean Davis 21k
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883
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Visualizing and distances using GO graph question,
GO graph GO graph
21.2 years ago SAURIN ★ 1.1k
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1.2k
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Rgraphviz: read .dot file
graph Rgraphviz graph Rgraphviz
updated 21.2 years ago by 6.7k • written 21.3 years ago by ▴ 20
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2
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1.5k
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goTools and plot and go group names
GO graph goTools GO graph goTools
updated 21.3 years ago by ▴ 500 • written 21.3 years ago by ▴ 320
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1.2k
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Rgraphviz intall error
graph Rgraphviz graph Rgraphviz
updated 21.3 years ago by ▴ 20 • written 21.3 years ago by ▴ 30
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boundary() only gives the children of the subgraph; a possible DAG
graph graph
21.3 years ago Yi-Xiong Sean Zhou ▴ 50
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2
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1.4k
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where can I find the GO and xtable package?
GO Biobase annotate genefilter graph RBGL GOstats GO Biobase annotate genefilter graph
updated 21.3 years ago by ★ 5.5k • written 21.3 years ago by ▴ 320
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SparseM not found
graph graph
updated 21.5 years ago by ★ 3.9k • written 21.5 years ago by ▴ 620
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heatmap() customization
graph graph
updated 21.6 years ago by 21k • written 21.6 years ago by ▴ 300
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Problems in limma package
Microarray graph limma Microarray graph limma
updated 21.7 years ago by 53k • written 21.7 years ago by ▴ 100
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Recent changes to Bioconductor packages
Microarray Ruuid graph limma EBarrays Microarray Ruuid graph limma EBarrays
21.7 years ago madman@jimmy.harvard.edu ▴ 850
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1.7k
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Recent changes to Bioconductor packages
reposTools graph Rgraphviz simpleaffy impute reposTools graph Rgraphviz simpleaffy impute
21.8 years ago madman@jimmy.harvard.edu ▴ 850
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1.6k
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Another question Re: question on hgu95 metadata and ontoTools
GO probe affy graph ontoTools PROcess GO probe affy graph ontoTools PROcess
21.9 years ago Elisabetta Manduchi ▴ 160
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1.2k
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Re: limma plot error?
Normalization graph limma GeneTraffic Normalization graph limma GeneTraffic
21.9 years ago Gordon Smyth 53k
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Recent changes to Bioconductor packages
reposTools graph widgetTools limma reposTools graph widgetTools limma
22.2 years ago • updated 22.1 years ago madman@jimmy.harvard.edu ▴ 850
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1.5k
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RE: Bioconductor Digest, Vol 8, Issue 15
Microarray Clustering Cancer affy graph SAGElyzer Rgraphviz Rdbi RBGL Microarray Cancer
updated 22.2 years ago by ▴ 180 • written 22.2 years ago by ▴ 160
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installation problem
Ruuid genefilter rhdf5 multtest affy graph Rgraphviz RBGL Ruuid genefilter rhdf5 affy
updated 22.2 years ago by 6.7k • written 22.2 years ago by ▴ 30
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3
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1.3k
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Rgraphviz and Windows
graph Rgraphviz graph Rgraphviz
updated 22.2 years ago by ★ 3.9k • written 22.2 years ago by ▴ 10
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3
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1.5k
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Recent changes to Bioconductor packages
genefilter affy graph Rgraphviz limma annaffy genefilter affy graph Rgraphviz limma
22.2 years ago madman@jimmy.harvard.edu ▴ 850
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3
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1.8k
views
R and ARB
graph graph
updated 22.2 years ago by ▴ 20 • written 22.2 years ago by ▴ 430
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1
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877
views
Missing method in graph
graph graph
updated 22.3 years ago by 6.7k • written 22.3 years ago by ▴ 430
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1
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1.3k
views
installatioin problem
rhdf5 reposTools graph Rgraphviz rhdf5 reposTools graph Rgraphviz
updated 22.3 years ago by ★ 3.9k • written 22.3 years ago by ▴ 20
360 results • Page 7 of 8
Recent ...
Replies
Comment: problem reading bam files into nucleR by efoss ▴ 10
I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…
Answer: two questions about limma by Gordon Smyth 53k
Answered here: https://support.bioconductor.org/p/16318/
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0
Thank you very much! will take that into consideration
Comment: Large logFC but somewhat high FDR by JKim • 0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.
Comment: upstream git branches of bioc-release by Jeroen ▴ 10
OK I have updated https://bioc-release.r-universe.dev accordingly. Let me know if you find version differences when mirroring binaries.
Votes
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
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