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gseGO
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2
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4.3k
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How can I visualize Gene Set Enrichment Results from gseGo fun. (clusterProfiler)?
ggplot2
clusterprofiler
visualization
gseGo
7.1 years ago • updated 3.5 years ago
tcalvo
▴ 90
4
votes
15
replies
3.9k
views
All genes in a set for gseGO funtion
gseGO
setSize
updated 19 months ago by
James W. MacDonald
65k • written 19 months ago by
Adelyn
▴ 10
0
votes
1
reply
2.2k
views
clusterProlifer: plotGOgraph() error with gseGO() result
clusterprofiler
gseGO
plotGOgraph()
topGO
updated 7.2 years ago by
Guangchuang Yu
★ 1.2k • written 7.2 years ago by
cjsifuen
• 0
0
votes
1
reply
1.3k
views
Remove highly similar terms from a GO gene set enrichment analysis
clusterProfiler
gseGO
gene ontology
go semantic similarity
gene set enrichment analysis
5.9 years ago
jan.soderman
• 0
0
votes
1
reply
998
views
How to change the siez of lables in heatmap
software error
go
dose
heatplot
gseGo
5.3 years ago
aboumarshal
• 0
0
votes
1
reply
863
views
How to Load a Molecular Signature Database into clusterProfiler gseGO?
gseGO
GeneSet
clusterProfiler
GeneSetEnrichment
updated 10 months ago by
James W. MacDonald
65k • written 10 months ago by
manuelsokolov
• 0
2
votes
1
reply
232
views
Only positive enrichment score in GSEA
clusterProfiler
annotation
gseGO
gsea
OrgDb
updated 7 weeks ago by
Guido Hooiveld
★ 4.0k • written 8 weeks ago by
enee
▴ 10
7 results • Page
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Judging from your MDS plot, cell types 1 and 2 look radically different, so it would make perfect sense to analyse them separately. There's…
Answer: Numerical differences in DESeq2 output depending on different design matrix cons
by
Michael Love
42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs
by
Michael Love
42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
swbarnes2
★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
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Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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