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gtex
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reset
1
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3
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1.1k
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Can i perform DEseq2 from 2 different rse objects download from RECOUNT database
DESeq2
recount
GTEx
TCGA
recount3
updated 12 months ago by
ATpoint
★ 4.1k • written 12 months ago by
David
▴ 20
2
votes
2
replies
2.0k
views
Create TPM gene tables/dataframe from ReCount3
recount3
TCGA
GTEx
DESeq2
23 months ago
David
▴ 20
2
votes
2
replies
1.2k
views
Gene Selection GTex for DESeq2 Analysis
DESeq2
GTEx
3.3 years ago
Bine
▴ 40
0
votes
1
reply
3.4k
views
Is GTEx age and sex data available via the recount package?
recount
gtex
updated 5.6 years ago by
Leonardo Collado Torres
★ 1.1k • written 5.6 years ago by
abe
• 0
2
votes
2
replies
1.2k
views
Error in ebayes in limma when analyzing GTEx data
limma
voom
gtex
6.1 years ago
mico
• 0
1
vote
2
replies
1.8k
views
DESeq2 for differential gene expression on GTEx dataset
rnaseq
deseq2
gtex
updated 6.5 years ago by
Michael Love
42k • written 6.5 years ago by
vikram
• 0
2
votes
0
replies
3.9k
views
Tutorial:
BoF Bioc2017: Analyzing publicly available cancer genomics data from GTEx and TCGA with Bioconductor
public data
TCGA
GTEx
Tutorial
6.8 years ago
shepherl
3.9k
7 results • Page
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Comment: Not able to install any Bioconductor 3.18 package [unable to access index]
by
bravaccinimirea
• 0
I am experiencing the same problem, I tried with all the advices I found in similar posts but nothing seems to work
Comment: can't open mghp.osn.xsede.org
by
merv
▴ 120
Seeing this issue today, now with the R 4.3 + Bioc 3.18 version of this package. It is the Bioconductor servers that redirect to this unrel…
Comment: Help with infinite recursion - non-zero exit status in installation of GenomeInf
by
Brandon
▴ 20
I did try again...*repeatedly*...I even tried it on a VM. Thankfully I got it to work on the VM. I still can't get it to work on windows t…
Comment: recount3 problem downloading data from source sra
by
Leonardo Collado Torres
★ 1.1k
Hi, What do you get if you run the following `httr::HEAD()` command? I noticed that you have `libcurl` version 8.3.0 from `curl::curl_vers…
Comment: Slightly different count plots from R and spreadsheet
by
boczniak767
▴ 720
Thank you @mikelove for your patience and kind advice. So I assume the plots from R are valid. Best wishes.
Votes
can't open mghp.osn.xsede.org
Answer: can't open mghp.osn.xsede.org
Help with infinite recursion - non-zero exit status in installation of GenomeInfoDbData
Help with infinite recursion - non-zero exit status in installation of GenomeInfoDbData
Comment: recount3 problem downloading data from source sra
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