Bioconductor Gwascat

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GWASTools gwascat

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Comment: Unused arguments error without used arguments in GSVA? by michaelarringtony • 0

Perhaps from a direct call to gsva without the parameter [Sprunki Pyramixed][1] object [1]: https://pyramixed.io/

Comment: EdgeR Biological CVs by jeffreestary • 0

By default, edgeR uses an empirical Bayes approach to shrink gene-wise dispersions toward a trended or [PolyTrack][1] common value, which i…

Comment: How to reverse complement some elements of a DNAStringSet by shrill.asp.tufl • 0

Dealing with DNAStringSet manipulation can be tricky! When selectively reverse complementing sequences, consider how to efficiently retain …

Comment: Ensembl site unresponsive via biomaRt by mdeea123 ▴ 10

I am also having issues using BioMart to run code that has worked before. The problem first occurred last week. As I have encountered these…

Comment: Bioconductor unable to update 'curl' by kagodwi2 • 0

UPDATE: I was able to get curl to work! It seems that because the new version was literally JUST released, there is something "funky" goin…

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Answer: Is there any chance to solve "the model matrix is not full rank" in DESeq2?

clusterProfiler-GO enrichment Error

A: Machine learning in R book

Data preparation and Machine learning on time course RNAseq data

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