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gwascat
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526
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gwascat Liftover Fails Silently
gwascat
3.2 years ago
anailis
• 0
1
vote
2
replies
991
views
Incomplete GWAS Catalog Data from makeCurrentGwascat()
gwascat
r
3.3 years ago
anailis
• 0
1
vote
4
replies
1.4k
views
Errors when trying to install 'gwscat' on ubuntu with R 4.0.3
GWASTools
gwascat
updated 3.4 years ago by
Mike Smith
★ 6.5k • written 3.4 years ago by
wmov98
▴ 10
0
votes
0
replies
710
views
gwascat: error regarding mismatched genome builds when using makeCurrentGwascat()
gwascat
4.8 years ago
maya.kappil
▴ 30
5
votes
4
replies
1.9k
views
[gwascat] Updated GWAS catalog from file
gwascat
6.4 years ago
enricoferrero
▴ 660
0
votes
1
reply
1.2k
views
problem loading gwascat and ggbio
gwascat
ggbio
Mac
7.8 years ago
jameshunterbr
• 0
1
vote
2
replies
1.3k
views
[gwascat] makeCurrentGwascat() fails
gwascat
8.1 years ago
enricoferrero
▴ 660
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Answer: Dominance Index for Shotgun Metagenomics Data
by
Leo Lahti
▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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