Bioconductor Hgu133plus2.db

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affydata hgu133plus2.db AffymetrixChip

updated 20 months ago by ATpoint ★ 4.7k • written 20 months ago by Matthias Munz ▴ 20

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834

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hgu133plus2hsentrezg.db chiptype chipster hgu133plus2.db AffymetrixChip

21 months ago alexia.brunel • 0

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1.3k

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hgu133plus2.db limma DifferentialExpression affy

updated 3.8 years ago by Gordon Smyth 52k • written 3.8 years ago by Caamp • 0

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13k

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microarray software error hgu133plus2.db

updated 5.9 years ago by Martin Morgan 25k • written 5.9 years ago by naf • 0

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aafTableAnn microarray annafy hgu133plus2.db

updated 6.2 years ago by James W. MacDonald 68k • written 6.2 years ago by maxininfa • 0

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annotation hgu133plus2.db affymetrix microarrays micorarray

updated 6.3 years ago by James W. MacDonald 68k • written 6.3 years ago by 2323982403 ▴ 60

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1.2k

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hgu133plus2.db

updated 8.3 years ago by James W. MacDonald 68k • written 8.3 years ago by arkajyoti.bhattacharya • 0

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1.5k

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hgu133plus2.db

9.3 years ago matheus.cburger ▴ 20

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2.1k

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gene ID hgu133plus2.db

updated 10.3 years ago by James W. MacDonald 68k • written 10.3 years ago by nicolas.julien.jung • 0

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Answer: Use of org.Rn.eg.db with GRCr8 reference genome by James W. MacDonald 68k

You've got it backwards. It should be ``` adult_res_df$symbol <- mapIds(org.Rn.eg.db, keys = rownames(adult_res_df), column = "ENSEMBL"…

Comment: DESeq2 swap ensembl gene id rownames with gene symbol column by Erika • 0

Alternatively, you could have added a column with the common gene names. Assuming your dataframe `df` was created using `DESeq()`, somethin…

Answer: Clarification on GOALL / GO2ALLORFs mapping by James W. MacDonald 68k

It appears that 'negative regulation of glycogen biosynthesis' has an 'is a' relationship with 'glycogen biosynthetic process' https://www.…

Comment: Can't post a question? by DavideSant • 0

Thank you, this was super useful!

Comment: Error in retrieving clinical data by silickas • 0

Thank you for the reply. I will try to do that next time. This time instead, I used the GenomicDataCommons package to download clinical dat…

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Comment: Can't post a question?

Answer: Limma - Complex 2-way multi-level contrast with paired samples

Answer: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks

Help with creation of an OrgDB package and conduction of a bioinformatical analysis of gene expression

Answer: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf

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