Bioconductor Hgu133plus2.db

Showing : hgu133plus2.db • reset

votes

replies

1.3k

views

annotation hgu133plus2.db affymetrix microarrays micorarray

updated 5.4 years ago by James W. MacDonald 65k • written 5.4 years ago by 2323982403 ▴ 60

votes

replies

947

views

aafTableAnn microarray annafy hgu133plus2.db

updated 5.3 years ago by James W. MacDonald 65k • written 5.3 years ago by maxininfa • 0

vote

replies

965

views

hgu133plus2.db limma DifferentialExpression affy

updated 3.0 years ago by Gordon Smyth 50k • written 3.0 years ago by Caamp • 0

vote

replies

489

views

hgu133plus2hsentrezg.db chiptype chipster hgu133plus2.db AffymetrixChip

10 months ago alexia.brunel • 0

votes

1.2k

views

hgu133plus2.db

8.5 years ago matheus.cburger ▴ 20

votes

replies

11k

views

microarray software error hgu133plus2.db

updated 5.0 years ago by Martin Morgan 25k • written 5.0 years ago by naf • 0

votes

1.9k

views

gene ID hgu133plus2.db

updated 9.4 years ago by James W. MacDonald 65k • written 9.4 years ago by nicolas.julien.jung • 0

votes

479

views

affydata hgu133plus2.db AffymetrixChip

updated 9 months ago by ATpoint ★ 4.1k • written 9 months ago by Matthias Munz ▴ 10

votes

1.0k

views

hgu133plus2.db

updated 7.4 years ago by James W. MacDonald 65k • written 7.4 years ago by arkajyoti.bhattacharya • 0

9 results • Page 1 of 1

Recent ...

Replies

Comment: log2FoldChange value is way too different when compared with counts(dds) by Michael Love 41k

But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…

Comment: log2FoldChange value is way too different when compared with counts(dds) by HAK • 0

Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…

Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call by ATpoint ★ 4.1k

Here the error probably means that you habe genes where expression scross all samples is the same. Rowscaling is value minus mean divided b…

Comment: Store output of matchPWM() by James W. MacDonald 65k

Here's a self contained reproducible example, using part of the example in `?matchPWM` ``` > library(Biostrings) > data(HNF4alpha) > libr…

Comment: DEseq2 coefficient by JKim • 0

Hi Dr. Love, I'm sorry to ask another question to my old post. If the design isn't balanced, the interpretation of coefficients will be…

Votes

SPIA plotP giving error

Answer: Fold change calculation in Diffbind vs. DESEQ2?

C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB

C: Extremely big genes in annotation TxDb packages

Make custom Txdb class objects from Txdb

Awards • All

Popular Question to tangming2005 ▴ 190