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hopach
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0
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Hopach: distancematrix and distancevector do not return identical results
documentation
bug
hopach
euclidean
distance
3.1 years ago
txema.heredia
• 0
1
vote
5
replies
6.2k
views
HOPACH error: "negative length vectors are not allowed" in distancematrix(). Matrix too large?
hopach
updated 10.0 years ago by
kpollard
▴ 110 • written 10.0 years ago by
ejliaw
• 0
0
votes
3
replies
1.4k
views
hopach generates a wrong output
hopach
10.3 years ago • updated 10.2 years ago
Alogmail2@aol.com
▴ 90
0
votes
0
replies
1.7k
views
displaying clustering results in TreeView or MapleTree
Microarray
Clustering
Kidney
Ovarian
probe
hopach
Microarray
Clustering
Kidney
Ovarian
13.2 years ago
Mark Baumeister
▴ 40
0
votes
1
reply
1.6k
views
CRAN packages maintained by you
hexbin
gpls
RBGL
impute
Icens
hopach
maanova
RLMM
CORREP
cycle
hexbin
gpls
RBGL
Icens
updated 13.4 years ago by
Nicholas Lewin-Koh
▴ 430 • written 13.4 years ago by
Kurt Hornik
▴ 10
0
votes
13
replies
2.7k
views
Bioconductor Digest, Vol 87, Issue 10
Clustering
hopach
Clustering
hopach
updated 14.9 years ago by
Richard Pearson
▴ 160 • written 14.9 years ago by
avinash gupta
▴ 130
0
votes
0
replies
1.2k
views
Problem with Hopach: "Error in dmat[ord, ]"
drosophila2
hopach
drosophila2
hopach
15.5 years ago
Samuel GRANJEAUD - IR/ICIM
▴ 60
0
votes
0
replies
1.1k
views
Problem with Hopach: "Error in dmat[ord, ]"
drosophila2
hopach
drosophila2
hopach
15.8 years ago
Paolo Innocenti
▴ 320
0
votes
2
replies
1.5k
views
Problem with Hopach: "Error in dmat[ord, ]"
drosophila2
hopach
drosophila2
hopach
updated 15.9 years ago by
Vincent J. Carey, Jr.
6.7k • written 15.9 years ago by
Paolo Innocenti
▴ 320
0
votes
0
replies
985
views
Hopach cluster quality metrics
hopach
hopach
16.4 years ago
Khan, Anar
▴ 30
0
votes
0
replies
1.1k
views
HOPACH and .cdt which doesn't work with javatreeview
Clustering
hopach
Clustering
hopach
16.6 years ago
Sébastien Tourlet
▴ 20
0
votes
1
reply
1.3k
views
HOPACH clustering of genes
Clustering
hopach
Clustering
hopach
updated 16.7 years ago by
Shannon, William
▴ 20 • written 16.7 years ago by
Nathan Harmston
▴ 100
0
votes
0
replies
910
views
Why makeoutput() function is not included in hopach 1.4.3 version
Microarray
Clustering
hopach
Microarray
Clustering
hopach
16.8 years ago
Suprabhath Reddy
▴ 10
0
votes
1
reply
1.1k
views
How to extract Hopach MSS value
Clustering
hopach
Clustering
hopach
updated 17.2 years ago by
Vincent J. Carey, Jr.
6.7k • written 17.2 years ago by
Prateek Singh
▴ 20
0
votes
1
reply
3.1k
views
ReadAffy can not find function read.AnnotatedDataFrame
Biobase
genefilter
affydata
limma
simpleaffy
hopach
affyio
Biobase
genefilter
affydata
updated 18.3 years ago by
James W. MacDonald
68k • written 18.3 years ago by
Georg Otto
▴ 510
0
votes
0
replies
1.1k
views
hopach and heatmap
Clustering
hopach
Clustering
hopach
18.8 years ago
Ivan Baxter
▴ 60
0
votes
0
replies
1.1k
views
About Hopach package
hopach
hopach
19.5 years ago
kpollard
▴ 110
0
votes
0
replies
963
views
About Hopach package
Clustering
hopach
Clustering
hopach
19.6 years ago
z3076426@student.unsw.edu.au
▴ 10
0
votes
0
replies
1.1k
views
How to use distance functions from hopach package in a heatmap?
hopach
hopach
19.7 years ago
kpollard
▴ 110
0
votes
1
reply
1.1k
views
R terminated when i try HOPACH in a loop,why?
hopach
hopach
updated 19.9 years ago by
Seth Falcon
★ 7.4k • written 19.9 years ago by
Xiao Shi
▴ 90
0
votes
0
replies
1.0k
views
(no subject)
hopach
hopach
20.0 years ago
kpollard
▴ 110
0
votes
0
replies
1.0k
views
[BioC}: export Hopoah to treeview
hopach
hopach
20.0 years ago
Anthony Bosco
▴ 500
22 results • Page
1 of 1
Recent ...
Replies
Comment: DiffBind custom normalization factor
by
Abbie
• 0
Hello! Thanks so much for adding dba.normalize and all the documentation in the manual! I'm hoping I can ask a follow-up question here. I…
Answer: CpGs with genomic positions greater than the chromosome size in EPICv2?
by
James W. MacDonald
68k
All of the annotation packages provided by Bioconductor are simply repackaging of existing data from one or more sources. In this case, the…
Comment: Using TPM from tximport of Salmon output for singscore
by
Kent
• 0
Thank you for the suggestions Michael. Would you say that after filtering out the low count genes, `rlog(counts, blind = T)` is doing the s…
Comment: Using TPM from tximport of Salmon output for singscore
by
Michael Love
43k
For clustering generally we recommend `vst()` see the workflow for example. For working with individual samples, I can see how a scaling/t…
Comment: DESeq2 model - How to test case/control time course model when taking account wi
by
Michael Love
43k
I'd recommend working with a local statistician or someone familiar with linear models in R. I have to reserve my time on the support site …
Votes
clusterProfiler-GO enrichment Error
A: Machine learning in R book
Data preparation and Machine learning on time course RNAseq data
Data preparation and Machine learning on time course RNAseq data
Answer: Use of org.Rn.eg.db with GRCr8 reference genome
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