Showing : hopach • reset
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Hopach: distancematrix and distancevector do not return identical results
documentation bug hopach euclidean distance
3.8 years ago txema.heredia • 0
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5
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HOPACH error: "negative length vectors are not allowed" in distancematrix(). Matrix too large?
hopach
updated 10.6 years ago by ▴ 110 • written 10.7 years ago by • 0
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3
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hopach generates a wrong output
hopach
11.0 years ago • updated 10.9 years ago Alogmail2@aol.com ▴ 90
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displaying clustering results in TreeView or MapleTree
Microarray Clustering Kidney Ovarian probe hopach Microarray Clustering Kidney Ovarian
13.9 years ago Mark Baumeister ▴ 40
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CRAN packages maintained by you
hexbin gpls RBGL impute Icens hopach maanova RLMM CORREP cycle hexbin gpls RBGL Icens
updated 14.1 years ago by ▴ 430 • written 14.1 years ago by ▴ 10
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13
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3.1k
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Bioconductor Digest, Vol 87, Issue 10
Clustering hopach Clustering hopach
updated 15.6 years ago by ▴ 160 • written 15.6 years ago by ▴ 130
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Problem with Hopach: "Error in dmat[ord, ]"
drosophila2 hopach drosophila2 hopach
16.2 years ago Samuel GRANJEAUD - IR/ICIM ▴ 60
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Problem with Hopach: "Error in dmat[ord, ]"
drosophila2 hopach drosophila2 hopach
16.5 years ago Paolo Innocenti ▴ 320
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Problem with Hopach: "Error in dmat[ord, ]"
drosophila2 hopach drosophila2 hopach
updated 16.6 years ago by 6.7k • written 16.6 years ago by ▴ 320
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Hopach cluster quality metrics
hopach hopach
17.1 years ago Khan, Anar ▴ 30
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1.2k
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HOPACH and .cdt which doesn't work with javatreeview
Clustering hopach Clustering hopach
17.3 years ago Sébastien Tourlet ▴ 20
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1
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HOPACH clustering of genes
Clustering hopach Clustering hopach
updated 17.4 years ago by ▴ 20 • written 17.4 years ago by ▴ 100
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Why makeoutput() function is not included in hopach 1.4.3 version
Microarray Clustering hopach Microarray Clustering hopach
17.5 years ago Suprabhath Reddy ▴ 10
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1
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1.2k
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How to extract Hopach MSS value
Clustering hopach Clustering hopach
updated 17.9 years ago by 6.7k • written 17.9 years ago by ▴ 20
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1
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3.2k
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ReadAffy can not find function read.AnnotatedDataFrame
Biobase genefilter affydata limma simpleaffy hopach affyio Biobase genefilter affydata
updated 19.0 years ago by 68k • written 19.0 years ago by ▴ 510
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hopach and heatmap
Clustering hopach Clustering hopach
19.5 years ago Ivan Baxter ▴ 60
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0
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1.2k
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About Hopach package
hopach hopach
20.2 years ago kpollard ▴ 110
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1.0k
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About Hopach package
Clustering hopach Clustering hopach
20.3 years ago z3076426@student.unsw.edu.au ▴ 10
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How to use distance functions from hopach package in a heatmap?
hopach hopach
20.4 years ago kpollard ▴ 110
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1
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1.2k
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R terminated when i try HOPACH in a loop,why?
hopach hopach
updated 20.6 years ago by ★ 7.4k • written 20.6 years ago by ▴ 90
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1.1k
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(no subject)
hopach hopach
20.7 years ago kpollard ▴ 110
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[BioC}: export Hopoah to treeview
hopach hopach
20.7 years ago Anthony Bosco ▴ 500
22 results • Page 1 of 1
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Answer: problem reading bam files into nucleR by James W. MacDonald 68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Answer: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k
It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …
Comment: problem reading bam files into nucleR by efoss ▴ 10
I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…
Answer: two questions about limma by Gordon Smyth 53k
Answered here: https://support.bioconductor.org/p/16318/
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0
Thank you very much! will take that into consideration
Votes
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
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Commentator to sina.nassiri ▴ 130
Popular Question to Hervé Pagès 16k
Popular Question to jared.andrews07 ▴ 30
Popular Question to James W. MacDonald 68k
Popular Question to shepherl 4.2k
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