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hopach
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0
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Hopach: distancematrix and distancevector do not return identical results
documentation
bug
hopach
euclidean
distance
3.7 years ago
txema.heredia
• 0
1
vote
5
replies
6.4k
views
HOPACH error: "negative length vectors are not allowed" in distancematrix(). Matrix too large?
hopach
updated 10.5 years ago by
kpollard
▴ 110 • written 10.5 years ago by
ejliaw
• 0
0
votes
3
replies
1.5k
views
hopach generates a wrong output
hopach
10.8 years ago
Alogmail2@aol.com
▴ 90
0
votes
0
replies
1.7k
views
displaying clustering results in TreeView or MapleTree
Microarray
Clustering
Kidney
Ovarian
probe
hopach
Microarray
Clustering
Kidney
Ovarian
13.8 years ago
Mark Baumeister
▴ 40
0
votes
1
reply
1.7k
views
CRAN packages maintained by you
hexbin
gpls
RBGL
impute
Icens
hopach
maanova
RLMM
CORREP
cycle
hexbin
gpls
RBGL
Icens
updated 14.0 years ago by
Nicholas Lewin-Koh
▴ 430 • written 14.0 years ago by
Kurt Hornik
▴ 10
0
votes
13
replies
3.1k
views
Bioconductor Digest, Vol 87, Issue 10
Clustering
hopach
Clustering
hopach
updated 15.4 years ago by
Richard Pearson
▴ 160 • written 15.4 years ago by
avinash gupta
▴ 130
0
votes
0
replies
1.2k
views
Problem with Hopach: "Error in dmat[ord, ]"
drosophila2
hopach
drosophila2
hopach
16.0 years ago
Samuel GRANJEAUD - IR/ICIM
▴ 60
0
votes
0
replies
1.2k
views
Problem with Hopach: "Error in dmat[ord, ]"
drosophila2
hopach
drosophila2
hopach
16.3 years ago
Paolo Innocenti
▴ 320
0
votes
2
replies
1.6k
views
Problem with Hopach: "Error in dmat[ord, ]"
drosophila2
hopach
drosophila2
hopach
updated 16.4 years ago by
Vincent J. Carey, Jr.
6.7k • written 16.4 years ago by
Paolo Innocenti
▴ 320
0
votes
0
replies
1.0k
views
Hopach cluster quality metrics
hopach
hopach
17.0 years ago
Khan, Anar
▴ 30
0
votes
0
replies
1.1k
views
HOPACH and .cdt which doesn't work with javatreeview
Clustering
hopach
Clustering
hopach
17.1 years ago
Sébastien Tourlet
▴ 20
0
votes
1
reply
1.4k
views
HOPACH clustering of genes
Clustering
hopach
Clustering
hopach
updated 17.3 years ago by
Shannon, William
▴ 20 • written 17.3 years ago by
Nathan Harmston
▴ 100
0
votes
0
replies
959
views
Why makeoutput() function is not included in hopach 1.4.3 version
Microarray
Clustering
hopach
Microarray
Clustering
hopach
17.4 years ago
Suprabhath Reddy
▴ 10
0
votes
1
reply
1.2k
views
How to extract Hopach MSS value
Clustering
hopach
Clustering
hopach
updated 17.7 years ago by
Vincent J. Carey, Jr.
6.7k • written 17.7 years ago by
Prateek Singh
▴ 20
0
votes
1
reply
3.2k
views
ReadAffy can not find function read.AnnotatedDataFrame
Biobase
genefilter
affydata
limma
simpleaffy
hopach
affyio
Biobase
genefilter
affydata
updated 18.9 years ago by
James W. MacDonald
68k • written 18.9 years ago by
Georg Otto
▴ 510
0
votes
0
replies
1.1k
views
hopach and heatmap
Clustering
hopach
Clustering
hopach
19.3 years ago
Ivan Baxter
▴ 60
0
votes
0
replies
1.1k
views
About Hopach package
hopach
hopach
20.1 years ago
kpollard
▴ 110
0
votes
0
replies
1.0k
views
About Hopach package
Clustering
hopach
Clustering
hopach
20.2 years ago
z3076426@student.unsw.edu.au
▴ 10
0
votes
0
replies
1.2k
views
How to use distance functions from hopach package in a heatmap?
hopach
hopach
20.3 years ago
kpollard
▴ 110
0
votes
1
reply
1.2k
views
R terminated when i try HOPACH in a loop,why?
hopach
hopach
updated 20.5 years ago by
Seth Falcon
★ 7.4k • written 20.5 years ago by
Xiao Shi
▴ 90
0
votes
0
replies
1.1k
views
(no subject)
hopach
hopach
20.6 years ago
kpollard
▴ 110
0
votes
0
replies
1.1k
views
[BioC}: export Hopoah to treeview
hopach
hopach
20.6 years ago
Anthony Bosco
▴ 500
22 results • Page
1 of 1
Recent ...
Replies
Comment: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and G
by
dzv20413
• 0
Wow, GBCC 2025 sounds amazing, can not wait to see the logo contest results! Also, I just played [Level Devil][1] and it is super addictive…
Comment: Memory error while running alignments
by
Erik Wright
▴ 150
How much memory is available on the computer? A distance matrix of 50k sequences requires at least 50k*50k/2 * 8 bytes = 10GB, assuming the…
Comment: NA values for DESeq2 p-values and adjusted p-values using large sample sizes
by
Gabriel
• 0
Thank you very much for the reply. However, none of these three options seems to fit: 1) The genes for which NA appears do not have all 0 …
Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames
by
ubjw24
• 0
Thank you for your replies. I got the problem solved by installing mutSignature with this line: ``` devtools::install_github("dami82/mutS…
Comment: DESeq2 design for haplotype MPRA
by
Rita
• 0
Thank you very much, I appreciate it!
Votes
Comment: Check removeBatchEffect effectiveness
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
Answer: DESeq2 design for haplotype MPRA
A: Different logFC (log2foldchange) values for genes from limma-voom and other too
Comment: Check removeBatchEffect effectiveness
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Gordon Smyth
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Hervé Pagès
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