Showing : hopach • reset
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Hopach: distancematrix and distancevector do not return identical results
documentation bug hopach euclidean distance
3.7 years ago txema.heredia • 0
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HOPACH error: "negative length vectors are not allowed" in distancematrix(). Matrix too large?
hopach
updated 10.5 years ago by ▴ 110 • written 10.5 years ago by • 0
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3
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hopach generates a wrong output
hopach
10.8 years ago Alogmail2@aol.com ▴ 90
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displaying clustering results in TreeView or MapleTree
Microarray Clustering Kidney Ovarian probe hopach Microarray Clustering Kidney Ovarian
13.8 years ago Mark Baumeister ▴ 40
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CRAN packages maintained by you
hexbin gpls RBGL impute Icens hopach maanova RLMM CORREP cycle hexbin gpls RBGL Icens
updated 14.0 years ago by ▴ 430 • written 14.0 years ago by ▴ 10
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13
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Bioconductor Digest, Vol 87, Issue 10
Clustering hopach Clustering hopach
updated 15.4 years ago by ▴ 160 • written 15.4 years ago by ▴ 130
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Problem with Hopach: "Error in dmat[ord, ]"
drosophila2 hopach drosophila2 hopach
16.0 years ago Samuel GRANJEAUD - IR/ICIM ▴ 60
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Problem with Hopach: "Error in dmat[ord, ]"
drosophila2 hopach drosophila2 hopach
16.3 years ago Paolo Innocenti ▴ 320
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Problem with Hopach: "Error in dmat[ord, ]"
drosophila2 hopach drosophila2 hopach
updated 16.4 years ago by 6.7k • written 16.4 years ago by ▴ 320
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Hopach cluster quality metrics
hopach hopach
17.0 years ago Khan, Anar ▴ 30
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HOPACH and .cdt which doesn't work with javatreeview
Clustering hopach Clustering hopach
17.1 years ago Sébastien Tourlet ▴ 20
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HOPACH clustering of genes
Clustering hopach Clustering hopach
updated 17.3 years ago by ▴ 20 • written 17.3 years ago by ▴ 100
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Why makeoutput() function is not included in hopach 1.4.3 version
Microarray Clustering hopach Microarray Clustering hopach
17.4 years ago Suprabhath Reddy ▴ 10
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1
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1.2k
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How to extract Hopach MSS value
Clustering hopach Clustering hopach
updated 17.7 years ago by 6.7k • written 17.7 years ago by ▴ 20
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1
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3.2k
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ReadAffy can not find function read.AnnotatedDataFrame
Biobase genefilter affydata limma simpleaffy hopach affyio Biobase genefilter affydata
updated 18.9 years ago by 68k • written 18.9 years ago by ▴ 510
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hopach and heatmap
Clustering hopach Clustering hopach
19.3 years ago Ivan Baxter ▴ 60
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1.1k
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About Hopach package
hopach hopach
20.1 years ago kpollard ▴ 110
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1.0k
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About Hopach package
Clustering hopach Clustering hopach
20.2 years ago z3076426@student.unsw.edu.au ▴ 10
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How to use distance functions from hopach package in a heatmap?
hopach hopach
20.3 years ago kpollard ▴ 110
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1
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1.2k
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R terminated when i try HOPACH in a loop,why?
hopach hopach
updated 20.5 years ago by ★ 7.4k • written 20.5 years ago by ▴ 90
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(no subject)
hopach hopach
20.6 years ago kpollard ▴ 110
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[BioC}: export Hopoah to treeview
hopach hopach
20.6 years ago Anthony Bosco ▴ 500
22 results • Page 1 of 1
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Comment: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and G by dzv20413 • 0
Wow, GBCC 2025 sounds amazing, can not wait to see the logo contest results! Also, I just played [Level Devil][1] and it is super addictive…
Comment: Memory error while running alignments by Erik Wright ▴ 150
How much memory is available on the computer? A distance matrix of 50k sequences requires at least 50k*50k/2 * 8 bytes = 10GB, assuming the…
Comment: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by Gabriel • 0
Thank you very much for the reply. However, none of these three options seems to fit: 1) The genes for which NA appears do not have all 0 …
Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames by ubjw24 • 0
Thank you for your replies. I got the problem solved by installing mutSignature with this line: ``` devtools::install_github("dami82/mutS…
Comment: DESeq2 design for haplotype MPRA by Rita • 0
Thank you very much, I appreciate it!
Votes
Comment: Check removeBatchEffect effectiveness
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
Answer: DESeq2 design for haplotype MPRA
A: Different logFC (log2foldchange) values for genes from limma-voom and other too
Comment: Check removeBatchEffect effectiveness
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