Bioconductor Htseq

Showing : htseq • reset

votes

replies

1.3k

views

DEXSeq HTSeq R

2.3 years ago yr542 • 0

vote

replies

1.8k

views

DESeq2 microRNA HTSeq

3.0 years ago abhay.kanodia • 0

votes

1.3k

views

DESeq2 RNA-seq HTseq DESeqDataSetFromHTSeqCount

updated 3.0 years ago by Michael Love 43k • written 3.1 years ago by abhay.kanodia • 0

votes

replies

1.3k

views

DESeq2 htseq DEGseq RNASeq read

updated 3.1 years ago by Michael Love 43k • written 3.1 years ago by CP • 0

votes

replies

1.6k

views

software error HTSeq installation

updated 5.8 years ago by Martin Morgan 25k • written 5.8 years ago by eric33150 • 0

votes

replies

5.3k

views

voom htseq edgeR limma RNASeq123

updated 6.9 years ago by Gordon Smyth 53k • written 8.5 years ago by wd ▴ 30

votes

2.0k

views

DEXSeq dexseq_count htseq

8.8 years ago mat.lesche ▴ 110

vote

replies

2.5k

views

HTSeq HTSeqCounts Could not find function DEXSeq

updated 9.6 years ago by Martin Morgan 25k • written 9.6 years ago by sakura.nussbaum ▴ 10

8 results • Page 1 of 1

Recent ...

Replies

Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k

The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…

Answer: PTM analysis in LIMPA by Gordon Smyth 53k

For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…

Answer: problem reading bam files into nucleR by James W. MacDonald 68k

The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…

Votes

C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

Awards • All

Popular Question to James W. MacDonald 68k