Bioconductor Htseq

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1.2k

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DEXSeq HTSeq R

2.2 years ago • updated 2.1 years ago yr542 • 0

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1.7k

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DESeq2 microRNA HTSeq

2.8 years ago abhay.kanodia • 0

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1.2k

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DESeq2 RNA-seq HTseq DESeqDataSetFromHTSeqCount

updated 2.9 years ago by Michael Love 43k • written 2.9 years ago by abhay.kanodia • 0

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1.2k

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DESeq2 htseq DEGseq RNASeq read

updated 3.0 years ago by Michael Love 43k • written 3.0 years ago by CP • 0

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1.6k

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software error HTSeq installation

updated 5.6 years ago by Martin Morgan 25k • written 5.6 years ago by eric33150 • 0

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5.2k

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voom htseq edgeR limma RNASeq123

updated 6.8 years ago by Gordon Smyth 53k • written 8.4 years ago by wd ▴ 30

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1.9k

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DEXSeq dexseq_count htseq

8.7 years ago mat.lesche ▴ 110

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2.4k

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HTSeq HTSeqCounts Could not find function DEXSeq

updated 9.5 years ago by Martin Morgan 25k • written 9.5 years ago by sakura.nussbaum ▴ 10

8 results • Page 1 of 1

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Comment: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by Gabriel • 0

Thank you very much for the reply. However, none of these three options seems to fit: 1) The genes for which NA appears do not have all 0 …

Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames by ubjw24 • 0

Thank you for your replies. I got the problem solved by installing mutSignature with this line: ``` devtools::install_github("dami82/mutS…

Comment: DESeq2 design for haplotype MPRA by Rita • 0

Thank you very much, I appreciate it!

Answer: DESeq2 design for haplotype MPRA by Michael Love 43k

> My goal is to identify which non-reference haplotypes are differentially active compared to the corresponding ref/ref haplotype within ea…

Answer: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames by James W. MacDonald 68k

It seems fine on devel as well. ``` > BSgenome.Hsapiens.UCSC.hg38 | BSgenome object for Human | - organism: Homo sapiens | - provide…

Votes

Comment: Check removeBatchEffect effectiveness

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?

Answer: DESeq2 design for haplotype MPRA

A: Different logFC (log2foldchange) values for genes from limma-voom and other too

Comment: Check removeBatchEffect effectiveness

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Popular Question to Steve Lianoglou ★ 13k