Bioconductor Htseq

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1.3k

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DEXSeq HTSeq R

2.5 years ago • updated 2.4 years ago yr542 • 0

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1.8k

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DESeq2 microRNA HTSeq

3.1 years ago abhay.kanodia • 0

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1.3k

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DESeq2 RNA-seq HTseq DESeqDataSetFromHTSeqCount

updated 3.2 years ago by Michael Love 43k • written 3.2 years ago by abhay.kanodia • 0

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1.4k

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DESeq2 htseq DEGseq RNASeq read

updated 3.3 years ago by Michael Love 43k • written 3.3 years ago by CP • 0

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1.7k

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software error HTSeq installation

updated 5.9 years ago by Martin Morgan 25k • written 5.9 years ago by eric33150 • 0

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5.4k

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voom htseq edgeR limma RNASeq123

updated 7.1 years ago by Gordon Smyth 53k • written 8.7 years ago by wd ▴ 30

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2.1k

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DEXSeq dexseq_count htseq

9.0 years ago mat.lesche ▴ 110

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2.6k

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HTSeq HTSeqCounts Could not find function DEXSeq

updated 9.8 years ago by Martin Morgan 25k • written 9.8 years ago by sakura.nussbaum ▴ 10

8 results • Page 1 of 1

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Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k

No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.

Comment: Questions about bacon QC and correction on EWAS results by Tikaaa2sahaaaq2c • 0

In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …

Comment: using limma trend workflow in CAMERA by A.Barden ▴ 20

Do you need to set trend.var=TRUE when using camera in the limma-voom pipeline with RNA-Seq data (as apposed to limma-trend pipeline)?

Comment: Upcoming Ensembl API and data access changes - new blog post available by Tikaaa2sahaaaq2c • 0

Just as the Ensembl team transitions to a new platform for streamlined data access, diners can benefit from a digital newks menu prices con…

Comment: Error message that there is no package called Biobase by DamionLedner99 • 0

thanks for sharing!!! https://cran.r-project.org/

Votes

Answer: What happens to genes with low dispersion during dispersion shrinkage in DESeq2

Comment: Are transformed values from rlog /vst log2 normalized counts?

Answer: Are transformed values from rlog /vst log2 normalized counts?

A: DESeq2 normalization vs VST vs rlog

Answer: How to directly decet the outlier samples (libraries) in EdgeR pipeline

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Teacher to Michael Love 43k

Supporter to fl ▴ 20

Popular Question to James W. MacDonald 68k