Bioconductor Htseq

Showing : htseq • reset

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822

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DEXSeq HTSeq R

15 months ago • updated 14 months ago yr542 • 0

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1.3k

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DESeq2 microRNA HTSeq

22 months ago abhay.kanodia • 0

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966

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DESeq2 RNA-seq HTseq DESeqDataSetFromHTSeqCount

updated 23 months ago by Michael Love 42k • written 24 months ago by abhay.kanodia • 0

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918

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DESeq2 htseq DEGseq RNASeq read

updated 2.0 years ago by Michael Love 42k • written 2.0 years ago by CP • 0

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1.3k

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software error HTSeq installation

updated 4.7 years ago by Martin Morgan 25k • written 4.7 years ago by eric33150 • 0

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4.8k

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voom htseq edgeR limma RNASeq123

updated 5.8 years ago by Gordon Smyth 51k • written 7.4 years ago by wd ▴ 30

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1.7k

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DEXSeq dexseq_count htseq

7.7 years ago mat.lesche ▴ 110

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2.1k

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HTSeq HTSeqCounts Could not find function DEXSeq

updated 8.6 years ago by Martin Morgan 25k • written 8.6 years ago by sakura.nussbaum ▴ 10

8 results • Page 1 of 1

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Comment: Differential Expression Analysis with unbalanced batches without replication bet by Thili • 0

Thank you for your reply. I currently have batch-corrected data processed with scvi-tools (specifically, totalvi) and have followed the sam…

Comment: Problem at champ.load by andrew.gibbons • 0

I'd love to know if anyone has a workaround too. I've tried rolling back ChAMP and R to the previous versions that others have said work wi…

Comment: GOstats kegg analysis in wheat - help - none of the objects in the first column by GV Yoshikawa • 0

Thank you for the reply. I tried swapping columns before asking, it made no difference. head(keggframeData) path_id kegg…

Answer: Differential Expression Analysis with unbalanced batches without replication bet by Gordon Smyth 51k

> Is there an alternative model or approach in tools like edgeR, limma-voom, or DESeq2 or any other that can handle confounded batch effect…

Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0

I just found this workaround: httr::set_config(config(ssl_verifypeer = FALSE, ssl_verifyhost = FALSE)) at [this Stack Overflow link][…

Votes

A: Up/Down Regulated GeneList from edgeR and R

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

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Teacher to Gordon Smyth 51k

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