Showing : hugene20 • reset
3
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10
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2.2k
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Still need help identifying a good workflow for finding DEG in hugene 2.0 st
microarray hugene20 limma oligo
updated 8.9 years ago by ★ 28k • written 8.9 years ago by • 0
0
votes
0
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2.9k
views
DE analysis pipeline with Hugene 2.0 ST arrays
hugene20 microarray limma limma paired analysis oligo
8.9 years ago hakimelakhrass • 0
4
votes
10
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2.6k
views
Limma/oligo always crashing
limma microarray pd.hugene.2.0.st hugene20 oligo
8.9 years ago hakimelakhrass • 0
0
votes
4
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2.5k
views
HUgene 2.0 analyses heatmap
hugene20 heatmap affymetrixchip
updated 9.6 years ago by ▴ 130 • written 9.6 years ago by ▴ 10
0
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3
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2.6k
views
HUgene 2.0 analyses with CEL files, oligo package
microarray annotation hgu133plus2 hugene20
9.8 years ago kanacska ▴ 10
0
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3
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2.9k
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Reading Affymetrix data from pd.hugene.2.0.st using affy
affy pd.hugene.2.0.st hugene20 annotation microarray
9.8 years ago kanacska ▴ 10
2
votes
2
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3.1k
views
HuGene 2.0 ST CDF files and xps
xps hugene20
updated 10.2 years ago by ★ 3.9k • written 10.2 years ago by ▴ 60
7 results • Page 1 of 1
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Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0
Thanks for your reply!
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
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