Showing : hugene20 • reset
3
votes
10
replies
2.7k
views
Still need help identifying a good workflow for finding DEG in hugene 2.0 st
microarray hugene20 limma oligo
updated 9.8 years ago by ★ 29k • written 9.8 years ago by • 0
0
votes
0
replies
3.0k
views
DE analysis pipeline with Hugene 2.0 ST arrays
hugene20 microarray limma limma paired analysis oligo
9.8 years ago hakimelakhrass • 0
4
votes
10
replies
3.0k
views
Limma/oligo always crashing
limma microarray pd.hugene.2.0.st hugene20 oligo
9.8 years ago hakimelakhrass • 0
0
votes
4
replies
2.8k
views
HUgene 2.0 analyses heatmap
hugene20 heatmap affymetrixchip
updated 10.5 years ago by ▴ 130 • written 10.5 years ago by ▴ 10
0
votes
3
replies
2.8k
views
HUgene 2.0 analyses with CEL files, oligo package
microarray annotation hgu133plus2 hugene20
10.6 years ago kanacska ▴ 10
0
votes
3
replies
3.1k
views
Reading Affymetrix data from pd.hugene.2.0.st using affy
affy pd.hugene.2.0.st hugene20 annotation microarray
10.6 years ago kanacska ▴ 10
2
votes
2
replies
3.6k
views
HuGene 2.0 ST CDF files and xps
xps hugene20
updated 11.1 years ago by ★ 3.9k • written 11.1 years ago by ▴ 60
7 results • Page 1 of 1
Recent ...
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Answer: Add additional maintainer for MOFA2 by shepherl 4.2k
These requests are best on the bioc-devel @ r-project.org or a request to maintainer @ bioconductor.org -- We would ideally need the curre…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Answer: gene Set with high AUC score but no cells assigned to cell type by Kevin Blighe ★ 4.0k
Hi, You have correctly identified the issue: AUCell's automatic threshold selection is conservative by design, aiming for specificity to…
Answer: featureCounts -L: high unassigned:mapq fraction by Kevin Blighe ★ 4.0k
Hi Katarzyna, The discrepancy arises because your samtools stats were restricted to genic regions only, where alignments are typically o…
Votes
Using edgeR or DESeq2 to analyze allele-specific expression?
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
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