Bioconductor Hugene20

Showing : hugene20 • reset

votes

replies

2.8k

views

microarray hugene20 limma oligo

updated 10.0 years ago by Aaron Lun ★ 29k • written 10.0 years ago by hakimelakhrass • 0

votes

replies

3.1k

views

hugene20 microarray limma limma paired analysis oligo

10.0 years ago hakimelakhrass • 0

votes

replies

3.2k

views

limma microarray pd.hugene.2.0.st hugene20 oligo

10.0 years ago hakimelakhrass • 0

votes

replies

2.9k

views

hugene20 heatmap affymetrixchip

updated 10.7 years ago by alakatos ▴ 130 • written 10.7 years ago by kanacska ▴ 10

votes

replies

2.9k

views

microarray annotation hgu133plus2 hugene20

10.8 years ago kanacska ▴ 10

votes

replies

3.2k

views

affy pd.hugene.2.0.st hugene20 annotation microarray

10.8 years ago kanacska ▴ 10

votes

replies

3.7k

views

xps hugene20

updated 11.3 years ago by cstrato ★ 3.9k • written 11.3 years ago by Alison Ziesel ▴ 60

7 results • Page 1 of 1

Recent ...

Replies

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Michael Love 43k

You just need the mouse identifier (controls baseline) and the group specific allelic effect.

Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Julia Broadbent • 0

Hi Emily, Just sharing a resource for handling contaminants - we use the methods described in [Frankenfield et al. (2022)](https://pubs.acs…

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Michael Love 43k

You may want to speak with a local statistician, because you don't just want to find the first full rank matrix and run with that if it doe…

Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k

It is fine for your mass spec facility to include blank samples as part of their internal QC, but such samples should not in my opinion be …

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0

Hm, okay, in building a fake model by hand I think I'm realizing the problem: `mouse` and its variants are ideally acting as basically a ra…

Votes

A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen

Comment: limpa analysis advice

Answer: When to use edgeR or limma

Awards • All