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igv
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149
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Unclear exon-exon connection after RSubjunc() usage
IGV
Rsubjunc
Rsubread
8 weeks ago
thomas.heigl.ibk
• 0
0
votes
0
replies
731
views
Gviz colour reads by Read Group in AlignmentTrack
gviz
igv
4.9 years ago
ido.idobar
• 0
0
votes
1
reply
701
views
reload IGV exported feature to Gviz
gviz
igv
5.8 years ago
ta_awwad
▴ 10
0
votes
0
replies
1.3k
views
IGV like plots with GViz
gviz
R
IGV
6.8 years ago
Deepak Tanwar
▴ 10
4
votes
3
replies
2.8k
views
Is there an R package providing an R API for IGV / igvtools out there?
package
IGV
updated 8.2 years ago by
Paul Shannon
▴ 470 • written 8.2 years ago by
Henrik Bengtsson
★ 2.4k
2
votes
5
replies
3.7k
views
A parser for Tiled Data File (TDF) format?
file format
parser
IO
TDF
IGV
8.2 years ago
Henrik Bengtsson
★ 2.4k
6 results • Page
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Answer: Dominance Index for Shotgun Metagenomics Data
by
Leo Lahti
▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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